kegg-pathway-analysis
Guide to KEGG pathway enrichment for DEG results. Covers ORA vs GSEA, mandatory directionality splitting, KEGG organism codes, API failure handling with offline fallbacks, cross-condition comparisons, and answer-first reporting. Consult when running enrichment with clusterProfiler or gseapy.
Install / Use
npx skills add jaechang-hits/SciAgent-Skills --skill kegg-pathway-analysisInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
Development & EngineeringSupported Platforms
Our assessment of kegg-pathway-analysis
kegg-pathway-analysis scores 83/100 on our quality scale, 3121st of 4,619 Development & Engineering skills we index.
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
It has 367 GitHub stars, a meaningful sign that others use it.
Maintenance, license and trust
- The repository was last updated 37 days ago, so kegg-pathway-analysis is actively maintained.
- No license is declared. By default that means all rights are reserved: you can read it, but reusing or redistributing it is not clearly permitted. Ask the author before building on it commercially.
- Its trust signals score 88/100, with 1 caution from licensing, adoption, age or documentation. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
kegg-pathway-analysis compared with similar skills
All 4 of these similar skills score higher than kegg-pathway-analysis; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| kegg-pathway-analysis (this skill)by jaechang-hits | 83 | 367 | 37d ago | SKILL.md |
| Agent-Reachby Panniantong | 100 | 91.2k | 19d ago | CLAUDE.md |
| headroomby headroomlabs-ai | 100 | 74.4k | today | CLAUDE.md |
| ai-job-searchby MadsLorentzen | 100 | 45.0k | 1d ago | CLAUDE.md |
| claude-howtoby luongnv89 | 100 | 41.7k | 4d ago | CLAUDE.md |
Frequently asked questions
- How do I install kegg-pathway-analysis?
- Run
npx skills add jaechang-hits/SciAgent-Skills --skill kegg-pathway-analysis. The install tabs above show the steps for each supported agent. - Which AI agents does kegg-pathway-analysis work with?
- It is written for Universal, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is kegg-pathway-analysis safe to use?
- It declares no license and scores 88/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is kegg-pathway-analysis still maintained?
- The repository was last updated 37 days ago, so kegg-pathway-analysis is actively maintained.
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Languages
Trust signals
From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.