62 skills found · Page 3 of 3
tengmx / RnaseqcompBenchmarks for RNA-seq quantification pipelines
HCBravoLab / YanagiTranscript Segment Library Construction for RNA-Seq Quantification
Teichlab / ReadquantConvenience package for parsing RNA-seq quantification results
dalmolingroup / BulkrnaDalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
informationsea / MatatakiUltrafast mRNA Quantification software for RNA-Seq
COMBINE-lab / MeasuresmatterA treatise on quantification and differential expression from RNA-seq data
zavolanlab / PAQR KAPACscripts, pipelines and documentation to run PAQR and KAPAC; KAPAC allows to infer regulatory sequence motifs implicated in 3’ end processing changes; PAQR enables the quantification of poly(A) site usage from standard RNA-seq data
parklab / EmsarEMSAR quantifies transcripts from RNA-seq data (Citation : Lee et al., BMC Bioinformatics 2015, 16:278, http://www.biomedcentral.com/1471-2105/16/278)
CCBR / RENEEA comprehensive quality-control and quantification RNA-seq pipeline
chi-0828 / RNA Abundance Quantification On UPMEMRunning state-of-the-art RNA-seq abundance quantification software "kallisto" on UPMEM DPU system
chi-0828 / UpPipeUpPipe is an RNA abundance quantification design on a real processing-near-memory system (UPMEM DPU); the paper of this project is published in Design Automation Conference (DAC) 2023
Arnaroo / INDEGRAAccurate, easy and integrated suit to compare RNA samples with different degradation levels, quantify decay rates per-transcript and correct for degradation-induced artifacts in differential gene/transcript comparisons
ylab-hi / ScanExitronLRA package for the characterization and quantification of exitron splicing events in long-read RNA-seq
pachterlab / SHSOHMP 2024Code for reproducing the results in the second version of the preprint "Accurate quantification of single-nucleus and single-cell RNA-seq transcripts"
ldg21 / SGSeqSplice event prediction and quantification from RNA-seq data
YY-TMU / InPACTA computational method designed to identify and quantify IPA sites via the examination of contextual sequence patterns and RNA-seq reads alignment.
compbiolabucf / IntMTQIntegrated model for RNA-Seq based transcript quantification
BrooksLabUCSC / SplicediceA tool for detecting and quantifying alternative splicing with RNA-seq
dadrasarmin / Rnaseq Quantification Kallisto PipelineThis it the pipeline I use frequently to perform QC, filtering and trimming, and quantification of raw RNA-Seq reads.
grabherr / Moose2RNA-Seq expression normalization, quantification, and significance analyses. On how to run the program, see: http://grabherr.github.io/moose2/howto.html, for more information and documentation, please visit:
