508 skills found · Page 15 of 17
jaechang-hits / mouse-phenome-databaseRetrieve mouse phenotype data from the Jackson Laboratory Mouse Phenome Database (MPD) via its REST API. Browse 520+ projects, look up per-project measure metadata, pull strain-level means (raw or LS-mean adjusted) and per-animal values, find measures by MP/VT ontology terms, and resolve strain nome…
jaechang-hits / quickgo-databaseQuery EBI QuickGO REST API for GO terms and protein annotations. Fetch term metadata by ID, search by keyword, walk ancestor/descendant hierarchies, download annotations filtered by taxon, evidence code, aspect. Use for GO resolution, ontology traversal, annotation retrieval before enrichment.
jaechang-hits / regulomedb-databaseQuery RegulomeDB v2 GET REST API to score variants for regulatory function and retrieve overlapping evidence (TF binding, histone marks, DNase peaks, footprints, motifs, eQTLs, chromatin state). Scores range 1a (strongest) to 7 (none).
jaechang-hits / remap-databaseQuery ReMap 2022 TF ChIP-seq peak database via REST API and BED downloads. Retrieve TF peaks overlapping a region (chr:start-end), peaks near a gene, TFs by species, peaks filtered by biotype (promoter, enhancer), and BED files for a TF-cell type pair.
jaechang-hits / gseapy-gene-enrichmentGSEA and over-representation analysis (ORA) for RNA-seq and proteomics. Wraps Enrichr for ORA against MSigDB, KEGG, GO, and 200+ databases; runs preranked GSEA on ranked DE gene lists. Outputs enrichment tables and running-score plots. Use after DESeq2 or edgeR for pathway-level interpretation.
jaechang-hits / literature-reviewConducting systematic, scoping, and narrative literature reviews. Covers PRISMA/PRISMA-ScR protocols, search strategy (Boolean, MeSH), database selection (PubMed, Scopus, Web of Science, Embase), screening, data extraction, evidence synthesis (narrative, meta-analysis, thematic), and reporting
jaechang-hits / sciagent-skill-creatorScaffold a new SciAgent-Skills entry. Picks pipeline/toolkit/database/guide template, creates skills/{category}/{name}/SKILL.md with valid frontmatter, appends the registry.yaml entry, runs validation. Enforces name uniqueness, kebab-case, description keyword rules, schema rules from AGENTS.md.
giuseppe-trisciuoglio / spring-boot-security-jwtProvides JWT authentication and authorization patterns for Spring Boot 3.5.x covering token generation with JJWT, Bearer/cookie authentication, database/OAuth2 integration, and RBAC/permission-based access control using Spring Security 6.x
giuseppe-trisciuoglio / chunking-strategyProvides chunking strategies for RAG systems. Generates chunk size recommendations (256-1024 tokens), overlap percentages (10-20%), and semantic boundary detection methods. Validates semantic coherence and evaluates retrieval precision/recall metrics
giuseppe-trisciuoglio / aws-rds-spring-boot-integrationProvides patterns to configure AWS RDS (Aurora, MySQL, PostgreSQL) with Spring Boot applications. Configures HikariCP connection pools, implements read/write splitting, sets up IAM database authentication, enables SSL connections, and integrates with AWS Secrets Manager
giuseppe-trisciuoglio / qdrantProvides Qdrant vector database integration patterns with LangChain4j. Handles embedding storage, similarity search, and vector management for Java applications
giuseppe-trisciuoglio / spring-boot-crud-patternsProvides and generates complete CRUD workflows for Spring Boot 3 services. Creates feature-focused architecture with Spring Data JPA aggregates, repositories, DTOs, controllers, and REST APIs. Validates domain invariants and transaction boundaries
giuseppe-trisciuoglio / nestjs-code-reviewProvides comprehensive code review capability for NestJS applications, analyzing controllers, services, modules, guards, interceptors, pipes, dependency injection, and database integration patterns
giuseppe-trisciuoglio / spring-data-neo4jProvides Spring Data Neo4j integration patterns for Spring Boot applications
giuseppe-trisciuoglio / aws-cloudformation-rdsProvides AWS CloudFormation patterns for Amazon RDS databases
giuseppe-trisciuoglio / aws-sdk-java-v2-rdsProvides AWS RDS (Relational Database Service) management patterns using AWS SDK for Java 2.x
giuseppe-trisciuoglio / langchain4j-vector-stores-configurationProvides configuration patterns for LangChain4J vector stores in RAG applications
giuseppe-trisciuoglio / nestjsProvides comprehensive NestJS framework patterns with Drizzle ORM integration for building scalable server-side applications. Generates REST/GraphQL APIs, implements authentication guards, creates database schemas, and sets up microservices
giuseppe-trisciuoglio / aws-cloudformation-dynamodbProvides AWS CloudFormation patterns for DynamoDB tables, GSIs, LSIs, auto-scaling, and streams
giuseppe-trisciuoglio / spring-data-jpaProvides patterns to implement persistence layers with Spring Data JPA
giuseppe-trisciuoglio / unit-test-service-layerProvides patterns for unit testing service layer with Mockito. Creates isolated tests that mock repository calls, verify method invocations, test exception scenarios, and stub external API responses
giuseppe-trisciuoglio / drizzle-orm-patternsProvides comprehensive Drizzle ORM patterns for schema definition, CRUD operations, relations, queries, transactions, and migrations.
giuseppe-trisciuoglio / nestjs-drizzle-crud-generatorGenerates complete CRUD modules for NestJS applications with Drizzle ORM
datadrivenconstruction / as-built-documentationAutomate as-built documentation and digital handover for construction. Compile project records, generate O&M manuals, create asset databases, and ensure complete project closeout.
datadrivenconstruction / open-construction-estimateAccess and utilize open construction pricing databases. Match BIM elements to standardized work items, calculate costs using public unit price databases with 55,000+ work items.
datadrivenconstruction / dwg-to-excelConvert AutoCAD DWG files (1983-2026) to Excel databases using DwgExporter CLI. Extract layers, blocks, attributes, and geometry data without Autodesk licenses.
datadrivenconstruction / ifc-to-excelConvert IFC files (2x3, 4x1, 4x3) to Excel databases using IfcExporter CLI. Extract BIM data, properties, and geometry without proprietary software.
datadrivenconstruction / cwicr-data-loaderLoad and parse DDC CWICR construction cost database from multiple formats: Parquet, Excel, CSV, Qdrant snapshots. Foundation for all CWICR operations.
datadrivenconstruction / cwicr-historical-costTrack and analyze historical cost data using CWICR. Compare actual vs estimated costs, build project cost database, and improve future estimates.
datadrivenconstruction / cwicr-resource-analyzerAnalyze construction resources (labor, materials, equipment) from DDC CWICR database. Calculate resource requirements, productivity metrics, and optimization recommendations.
