12,195 skills found · Page 34 of 407
K-Dense-AI / statsmodelsFits and diagnoses Python statistical models including OLS, GLM, discrete and mixed models, ARIMA and SARIMAX. Supports coefficient inference, marginal effects, model comparison and time series forecasting with explicit design and uncertainty checks.
K-Dense-AI / telluriumSimulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives.
K-Dense-AI / hypothesis-generationFormulates evidence-bounded scientific questions, candidate hypotheses, rival explanations, causal or associational claims, discriminating predictions, measurements, and preregistration-ready analysis plans.
K-Dense-AI / optimize-for-gpuGPU-accelerates scientific Python on NVIDIA hardware and verifies that the result is correct and faster. Use for CUDA/GPU optimization; CPU-bound NumPy, SciPy, pandas, scikit-learn, NetworkX, scikit-image, vector-search, image-processing, graph, simulation, or file-I/O workloads; CuPy, cuDF, cuML, c…
K-Dense-AI / relionValidates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack consistency, gold-standard half sets, soft-mask validation, diagnostic Fourier shell correlation, and restart guidance.
K-Dense-AI / research-grantsSupports research proposal preparation and review for NSF, NIH, DOE, DARPA, and Taiwan NSTC, including opportunity-specific requirements, aims, review criteria, budgets, broader impacts, forms, and resubmissions.
K-Dense-AI / cellprofilerRuns reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.
K-Dense-AI / cellxgene-censusQueries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data
K-Dense-AI / dhdna-profilerApplies the DHDNA framework as an exploratory rubric for reasoning and writing patterns in supplied text. Used for explicit requests for DHDNA, cognitive-style reflection, a thinking-pattern profile, or comparisons of textual reasoning.
K-Dense-AI / latex-postersOpenRouter API key for optional schematic generation and review.
K-Dense-AI / nmrglueProcesses calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions.
K-Dense-AI / nwb-conversionConverts neuroscience acquisition data to Neurodata Without Borders files with NeuroConv and PyNWB, preserves metadata and timebases, checks evidence-based clock alignment, and produces schema validation, NWB Inspector findings and round-trip checks.
K-Dense-AI / open-notebookInstance password used as the Bearer token when auth is enabled.
K-Dense-AI / paperzillaReads projects, searches project feeds, and retrieves recommendations and canonical papers in Paperzilla through the pz CLI. Supports recent recommendations, paper details, markdown-based summaries, recommendation feedback, JSON export, and Atom feed URLs.
K-Dense-AI / parallel-webParallel API key; optional when CLI login credentials are available.
K-Dense-AI / pybammSimulates lithium-ion battery charge, discharge and rest experiments with PyBaMM, records parameter-set provenance, checks mesh and solver sensitivity, and compares predicted voltage curves with measured cycling data.
K-Dense-AI / pyzoteroZotero library type: ''user'' or ''group'' (default ''user'').
K-Dense-AI / qiime2-ampliconProcesses paired-end 16S amplicon reads into QIIME 2 ASVs and taxonomy with retained artifact provenance. Checks paired FASTQ manifests, primer orientation diagnostics, predicted post-trimming overlap, sample IDs, runtime versions and read retention, and guides selection of compatible taxonomic clas…
K-Dense-AI / scientific-critical-thinkingEvaluates scientific claims and evidence quality. Applies to experimental design validity, biases and confounders, statistical interpretation, evidence grading frameworks (GRADE, Cochrane Risk of Bias), and teaching critical analysis.
K-Dense-AI / bgpt-paper-searchSearches BGPT scientific papers by topic or DOI and retrieves claim-level evidence extracted from full text, including experiments, reported statistics, scope, limitations, and provenance. Use for literature reviews, evidence synthesis, and finding experimental details beyond abstracts.
K-Dense-AI / fictivOperates Fictiv (app.fictiv.com), the on-demand manufacturing platform, end to end in the user's browser. Covers uploading CAD parts, configuring process, material, finish, threads, tolerances and inspections, getting instant or manual quotes, reading and fixing DFM feedback, choosing lead time and…
K-Dense-AI / pacsomaticPrepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi genomics workflows from unaligned BAM inputs. Supports samplesheet generation, pinned Nextflow launch artifacts, local checks, LSF/Slurm/PBS Pro/SGE launcher submission, and startup troubleshooting.
K-Dense-AI / primekgQueries a pinned Precision Medicine Knowledge Graph (PrimeKG) CSV for typed gene, drug, disease, and phenotype nodes, direct associations, disease context, and one- or two-hop paths.
K-Dense-AI / autoskillOptional Foundry access for drafting.
K-Dense-AI / biopythonNCBI API key to raise Entrez rate limits.
K-Dense-AI / bioservicesContact email for the EMBL-EBI hosted NCBI BLAST service.
K-Dense-AI / canteraRuns Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement.
K-Dense-AI / cirqGoogle quantum computing framework
K-Dense-AI / citation-managementOptional OpenAlex key for a higher account budget.
K-Dense-AI / generate-imageOpenRouter API key used for image generation.
