pacsomatic
Operator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when the user needs to validate run inputs, generate pacsomatic-compliant samplesheets, prepare reproducible Nextflow launch artifacts, run locally or submit to schedulers (LSF/Slurm/PBS/SGE), and…
Install / Use
npx skills add K-Dense-AI/scientific-agent-skills --skill pacsomaticInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
AutomationSupported Platforms
Tags
Our assessment of pacsomatic
pacsomatic scores 89/100 on our quality scale, 227th of 1,003 Automation skills we index (top 23%).
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
With 46,441 GitHub stars, it is one of the more widely adopted skills in the catalogue.
Maintenance, license and trust
- The repository was last updated 3 days ago, so pacsomatic is actively maintained.
- It is released under the MIT license, a permissive license that allows use, modification and commercial use with attribution.
- Its trust signals score 100/100, with no cautions. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
pacsomatic compared with similar skills
All 4 of these similar skills score higher than pacsomatic; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| pacsomatic (this skill)by K-Dense-AI | 89 | 46.4k | 3d ago | SKILL.md |
| Agent-Reachby Panniantong | 100 | 85.3k | 9d ago | CLAUDE.md |
| rufloby ruvnet | 100 | 73.2k | today | CLAUDE.md |
| Scraplingby D4Vinci | 100 | 83.4k | today | MCP Server |
| algorithmic-artby anthropics | 100 | 177.9k | 2d ago | SKILL.md |
Frequently asked questions
- How do I install pacsomatic?
- Run
npx skills add K-Dense-AI/scientific-agent-skills --skill pacsomatic. The install tabs above show the steps for each supported agent. - Which AI agents does pacsomatic work with?
- It is written for Universal, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is pacsomatic safe to use?
- It is MIT-licensed and scores 100/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is pacsomatic still maintained?
- The repository was last updated 3 days ago, so pacsomatic is actively maintained.
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Languages
Trust signals
From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.