12,237 skills found · Page 131 of 408
aipoch / OpenAlexFind, verify, and synthesize scientific literature — from "what's the seminal paper for X" through full multi-source reviews. Covers grounding claims in real retrieved sources, avoiding fabricated citations, handling retractions, and calibrating confidence to evidence strength.
aipoch / customizeUse when the user wants to create or manage a Specialist agent or create, revise, publish, or delete a Skill through the conversational `/Customize` entry. Routes Skill work to the internal skill-creator and handles Specialist work through the JavaScript host.agents SDK.
aipoch / Evo 2Score, embed, and generate DNA sequences with Evo 2, a long-context genomic foundation model. Use this skill when: (1) Computing per-nucleotide or per-sequence likelihoods for variant effect scoring, (2) Embedding genomic windows for downstream classification, (3) Generating DNA conditioned on a pre…
aipoch / ESM-2Embed proteins with Meta AI's ESM-2 (`fair-esm` package). Use this skill when: (1) Extracting per-residue or per-sequence embeddings for downstream ML, (2) Masked-LM likelihood / mutation effect scoring, (3) Contact prediction from a sequence.
aipoch / indication-dossierGenerate a therapeutic indication dossier. Covers the patient population, epidemiology, disease biology, standard of care, regulatory precedent, and landmark clinical trials.
aipoch / LigandMPNNInverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN).
aipoch / scGPTEmbed and annotate single-cell expression data with scGPT, a foundation model for single-cell biology. Use this skill when: (1) Producing cell embeddings from an AnnData for clustering/integration, (2) Zero-shot or fine-tuned cell-type annotation, (3) Gene-level representation for perturbation/GRN t…
aipoch / ColabFold MSA server (api.colabfold.com)Structure prediction for protein, nucleic-acid, and small-molecule complexes with Boltz-2 (Passaro & Wohlwend et al. 2025, github.com/jwohlwend/boltz).
aipoch / Borzoi (PyTorch port)Predict genome-wide functional tracks (RNA-seq, CAGE, DNase, ChIP) from DNA sequence with Borzoi. Use this skill when: (1) Scoring the regulatory effect of a variant on expression/accessibility, (2) Generating predicted coverage tracks for a locus, (3) Prioritising non-coding variants by predicted t…
aipoch / skill-creatorCreate, revise, evaluate, publish, and improve Open-Science Skills through the native JavaScript host.skills composer
aipoch / ColabFold MSA server (api.colabfold.com)Predict protein structure for monomers and multimers with AlphaFold2 via the ColabFold runner (Mirdita et al. 2022, github.com/sokrypton/ColabFold; AlphaFold2 Jumper et al. 2021).
aipoch / ColabFold MSA server (api.colabfold.com)Structure prediction for protein, nucleic-acid, and small-molecule complexes with the Chai-1 foundation model (Chai Discovery 2024, github.com/chaidiscovery/chai-lab).
aipoch / DiffDock-LPredict small-molecule binding poses with DiffDock-L (Corso et al. 2023/2024, github.com/gcorso/DiffDock) — blind diffusion docking that places a ligand into a protein pocket without a predefined search box and ranks the samples with a learned confidence model.
aipoch / ProteinMPNNInverse-fold a protein backbone (PDB structure) into amino-acid sequence with ProteinMPNN (Dauparas et al. 2022, github.com/dauparas/ProteinMPNN).
aipoch / env-managementUse when a notebook run fails on a missing package (ImportError, ModuleNotFoundError, "there is no package called"), when you need to inspect an installed package version, or when you need to install, add, or manage Python or R packages for the notebook runtime.
aipoch / SolubleMPNNInverse-fold a backbone with SolubleMPNN — ProteinMPNN retrained on a soluble-PDB subset (Dauparas et al. 2022) — for sequences biased toward cytosolic expression and reduced aggregation.
remotion-dev / remotion-interactivityStructure Remotion markup for interactivity
remotion-dev / remotion-markupContent, animation and effects best practices
remotion-dev / remotion-best-practicesRouter for all Remotion skills
zebbern / audit-flowInteractive system flow tracing across CODE, API, AUTH, DATA, NETWORK layers with SQLite persistence and Mermaid export. Use for security audits, compliance documentation, flow tracing, feature ideation, brainstorming, debugging, architecture reviews, or incident post-mortems.
zebbern / broken-authenticationThis skill should be used when the user asks to "test for broken authentication vulnerabilities", "assess session management security", "perform credential stuffing tests", "evaluate password policies", "test for session fixation", or "identify authentication bypass flaws".
zebbern / cloud-penetration-testingThis skill should be used when the user asks to "perform cloud penetration testing", "assess Azure or AWS or GCP security", "enumerate cloud resources", "exploit cloud misconfigurations", "test O365 security", "extract secrets from cloud environments", or "audit cloud infrastructure".
zebbern / html-injection-testingThis skill should be used when the user asks to "test for HTML injection", "inject HTML into web pages", "perform HTML injection attacks", "deface web applications", or "test content injection vulnerabilities". It provides comprehensive HTML injection attack techniques and testing methodologies.
zebbern / idor-testingThis skill should be used when the user asks to "test for insecure direct object references," "find IDOR vulnerabilities," "exploit broken access control," "enumerate user IDs or object references," or "bypass authorization to access other users' data." It provides comprehensive guidance for detecti…
zebbern / linux-shell-scriptingThis skill should be used when the user asks to "create bash scripts", "automate Linux tasks", "monitor system resources", "backup files", "manage users", or "write production shell scripts". It provides ready-to-use shell script templates for system administration.
zebbern / metasploit-frameworkThis skill should be used when the user asks to "use Metasploit for penetration testing", "exploit vulnerabilities with msfconsole", "create payloads with msfvenom", "perform post-exploitation", "use auxiliary modules for scanning", or "develop custom exploits".
zebbern / pipeline-blueprintProvide CI/CD best practices and pipeline templates for GitHub Actions and GitLab CI, recommending configurations based on project type (frontend, backend, fullstack, library, monorepo, mobile).
zebbern / scanning-toolsThis skill should be used when the user asks to "perform vulnerability scanning", "scan networks for open ports", "assess web application security", "scan wireless networks", "detect malware", "check cloud security", or "evaluate system compliance".
zebbern / secure-code-reviewSystematically reviews code for SQL injection, XSS, SSRF, broken access control, cryptographic failures, and other common OWASP Top 10 vulnerabilities, providing vulnerable code examples and ready-to-use remediation guidance.
zebbern / shodan-reconnaissanceThis skill should be used when the user asks to "search for exposed devices on the internet," "perform Shodan reconnaissance," "find vulnerable services using Shodan," "scan IP ranges with Shodan," or "discover IoT devices and open ports." It provides comprehensive guidance for using Shodan's search…
