402 skills found · Page 1 of 14
browser-use / remote-browserControls an isolated Browser Use Cloud browser from a sandboxed machine with the current Browser Use CLI.
code-yeongyu / programmingApplies strict, modern language practice (typed errors, exhaustive match, tests that can fail) for Python, Rust, TypeScript, JavaScript, and Go.
sickn33 / agentic-test-auditAudit a pytest suite: surviving mutants and untested code, flaky, order-dependent and slow tests, and removal candidates checked on held-out mutants. Report-only.
sickn33 / agentic-verifyCheck that a Python change is caught by tests: run every mutant of the changed lines and write tests until they catch them. Reports evidence instead of a diff to read.
sickn33 / aider-delegateDelegate coding tasks to Aider (`aider`) only when the user explicitly
K-Dense-AI / bulk-rnaseqPrepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff.
K-Dense-AI / fluidsimPlans, configures, inspects, restarts, and analyzes bounded FluidSim computational-fluid-dynamics simulations with explicit numerical-validity and HPC safety checks. Use for FluidSim solver selection, parameter review, FFT/MPI setup, output diagnostics, or restart compatibility.
K-Dense-AI / molecular-dynamicsRuns and analyzes molecular dynamics simulations with OpenMM and MDAnalysis. Sets up protein/small molecule systems, defines force fields, runs energy minimization and production MD, and analyzes trajectories (RMSD, RMSF, contact maps, free energy surfaces).
K-Dense-AI / primer-designDesigns and audits PCR and RT-qPCR primers with Primer3, explicit thermodynamic conditions, reference-based off-target amplification searches, and traceable sequence coordinates.
K-Dense-AI / pymatgenAnalyzes, validates, converts, and transforms materials structures and computed materials data with pymatgen. Use for local phase diagrams, symmetry sensitivity, electronic-structure I/O, and bounded Materials Project queries.
K-Dense-AI / scientific-visualizationCreates and audits truthful, accessible, publication-ready scientific figures with Matplotlib, Seaborn, or Plotly. Use it for figure design, multi-panel layouts, uncertainty and missing-data displays, color/contrast review, image metadata validation, and journal export planning.
K-Dense-AI / scikit-bioBiological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
K-Dense-AI / tiledbvcfStores and retrieves genomic variant calls with TileDB-VCF. Use for indexed single-sample VCF/BCF ingestion, incremental cohorts, region and sample queries, streaming results, allele statistics, QC, and VCF/BCF export locally or through TileDB Cloud.
K-Dense-AI / uncertainty-and-unitsTracks physical units and propagates measurement uncertainty in scientific calculations using pint and uncertainties. Use for unit conversion and dimensional checking, GUM uncertainty budgets, Type A and Type B evaluation, coverage factors and expanded uncertainty, Monte Carlo propagation, significa…
K-Dense-AI / arboretoInfers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse expression inputs, and network stability checks.
K-Dense-AI / get-available-resourcesDetects host inventory and effective CPU, memory, disk, scheduler, container, and accelerator limits when a user asks for resource-aware planning or before a clearly resource-sensitive local workload.
K-Dense-AI / medchemApplies medicinal chemistry filters for compound triage, using drug-likeness rules (Lipinski, Veber, CNS), structural alert catalogs (PAINS, NIBR, ChEMBL), complexity metrics, and the medchem query language for library filtering.
K-Dense-AI / pymcBuilds and checks Bayesian models with PyMC, including hierarchical models, NUTS MCMC, variational inference, mutable-data predictions, posterior predictive checks, diagnostics, and PSIS-LOO model comparison. Use for probabilistic modeling and uncertainty inference in PyMC.
K-Dense-AI / usfiscaldataQueries the U.S. Treasury Fiscal Data REST API for federal financial data. No API key required. Use for national debt (Debt to the Penny), Daily Treasury Statements, Monthly Treasury Statements, Treasury securities auctions, interest rates, foreign exchange rates, savings bonds, or U.S.
K-Dense-AI / zarr-pythonStores and queries chunked N-D scientific arrays with Zarr-Python 3, including codecs, sharding, S3/GCS storage, and NumPy/Dask/Xarray integration. Use for array layout, bounded I/O, format migration, or scientific metadata preservation.
K-Dense-AI / openpivPerforms Particle Image Velocimetry (PIV) analysis with OpenPIV
K-Dense-AI / telluriumSimulates biochemical kinetic models from SBML or Antimony with Tellurium and libRoadRunner, checks model units, compares deterministic parameter perturbations, and exports and replays SBML plus SED-ML COMBINE archives.
K-Dense-AI / nmrglueProcesses calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions.
K-Dense-AI / pybammSimulates lithium-ion battery charge, discharge and rest experiments with PyBaMM, records parameter-set provenance, checks mesh and solver sensitivity, and compares predicted voltage curves with measured cycling data.
K-Dense-AI / canteraRuns Cantera homogeneous chemical reactors and evaluates ignition delay with mechanism provenance, conservation checks, and numerical refinement.
K-Dense-AI / cirqGoogle quantum computing framework
K-Dense-AI / neuropixels-analysisFor optional Claude API calls.
Yuan1z0825 / nature-figureCreate, revise, audit, and export manuscript scientific figures in Python or R. Use for 论文配图、科研绘图、多面板图 and submission-ready plots, or explicitly requested AI-generated graphical abstracts and mechanism schematics. Not for interactive dashboards, data cleaning, or statistics-only analysis.
wshobson / async-python-patternsMaster Python asyncio, concurrent programming, and async/await patterns for high-performance applications
wshobson / python-configurationPython configuration management via environment variables and typed settings
