bulk-rnaseq
End-to-end bulk RNA-seq orchestrator — takes raw FASTQ reads through QC and trimming (FastQC, fastp/Trim Galore), alignment and quantification (STAR, Salmon, featureCounts), assembles a gene-level counts matrix, then hands off to differential expression (pydeseq2), pathway/GSEA enrichment (pathway-e…
Install / Use
npx skills add K-Dense-AI/scientific-agent-skills --skill bulk-rnaseqInstalls into whichever agent you are using.
SKILL.md
Installable skill definition
Quality Score
Category
AutomationSupported Platforms
Tags
Our assessment of bulk-rnaseq
bulk-rnaseq scores 89/100 on our quality scale, 205th of 1,003 Automation skills we index (top 21%).
We have not analysed the SKILL.md file itself yet, so the content part of this score is an estimate until our crawler reaches it.
With 46,441 GitHub stars, it is one of the more widely adopted skills in the catalogue.
Maintenance, license and trust
- The repository was last updated 3 days ago, so bulk-rnaseq is actively maintained.
- It is released under the MIT license, a permissive license that allows use, modification and commercial use with attribution.
- Its trust signals score 100/100, with no cautions. These come from repository metadata, not a code audit — read the skill file before letting an agent act on it.
bulk-rnaseq compared with similar skills
All 4 of these similar skills score higher than bulk-rnaseq; compare them before choosing.
| Skill | Score | Stars | Updated | Format |
|---|---|---|---|---|
| bulk-rnaseq (this skill)by K-Dense-AI | 89 | 46.4k | 3d ago | SKILL.md |
| Agent-Reachby Panniantong | 100 | 85.3k | 9d ago | CLAUDE.md |
| rufloby ruvnet | 100 | 73.2k | today | CLAUDE.md |
| Scraplingby D4Vinci | 100 | 83.4k | today | MCP Server |
| algorithmic-artby anthropics | 100 | 177.9k | 2d ago | SKILL.md |
Frequently asked questions
- How do I install bulk-rnaseq?
- Run
npx skills add K-Dense-AI/scientific-agent-skills --skill bulk-rnaseq. The install tabs above show the steps for each supported agent. - Which AI agents does bulk-rnaseq work with?
- It is written for Universal, as a SKILL.md file. Other agents that read the same format can often use it too.
- Is bulk-rnaseq safe to use?
- It is MIT-licensed and scores 100/100 on trust signals. Skills are instructions an agent will follow, so read the file before installing it and do not approve commands you do not understand.
- Is bulk-rnaseq still maintained?
- The repository was last updated 3 days ago, so bulk-rnaseq is actively maintained.
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Languages
Trust signals
From repository metadata: license, adoption, age and documentation. Not a code audit — see the Safety scan above for what the skill file itself contains.