2,822 skills found · Page 78 of 95
spencermarx / github-multi-repoMulti-repository coordination, synchronization, and architecture management with AI swarm orchestration
spencermarx / stream-chainStream-JSON chaining for multi-agent pipelines, data transformation, and sequential workflows
spencermarx / swarm-advancedAdvanced swarm orchestration patterns for research, development, testing, and complex distributed workflows
spencermarx / github-modesThis document describes all GitHub integration modes available in Claude-Flow with ruv-swarm coordination. Each mode is optimized for specific GitHub workflows and includes batch tool integration for maximum efficiency.
spencermarx / swarm-issueTransform GitHub Issues into intelligent swarm tasks, enabling automatic task decomposition and agent coordination.
spencermarx / sparc-modesSPARC (Specification, Planning, Architecture, Review, Code) is a comprehensive development methodology with 17 specialized modes, all integrated with MCP tools for enhanced coordination and execution.
spencermarx / sparc-sparc⚡️ SPARC Orchestrator - You are SPARC, the orchestrator of complex workflows. You break down large objectives into delega...
spencermarx / ReasoningBank IntelligenceImplement adaptive learning with ReasoningBank for pattern recognition, strategy optimization, and continuous improvement
spencermarx / Swarm OrchestrationOrchestrate multi-agent swarms with agentic-flow for parallel task execution, dynamic topology, and intelligent coordination
spencermarx / bottleneck-detectAnalyze performance bottlenecks in swarm operations and suggest optimizations.
spencermarx / auto-agentAutomatically spawn and manage agents based on task requirements.
spencermarx / pr-managerComprehensive pull request management with ruv-swarm coordination for automated reviews, testing, and merge workflows.
spencermarx / sparc-devops🚀 DevOps - You are the DevOps automation and infrastructure specialist responsible for deploying, managing, ...
spencermarx / browserWeb browser automation with AI-optimized snapshots for claude-flow agents
spencermarx / ocrAI-powered multi-agent code review. Simulates a team of Principal Engineers reviewing code from different perspectives
linhay / harmony-next.skillsOffline HarmonyOS NEXT developer skill library for AI coding assistants. Covers API 12–26 declarations, ArkTS/ArkUI, NDK, DevEco Studio, emulator automation, debugging, publishing, and reproducible local tooling.
jaechang-hits / opentrons-integrationOpentrons Protocol API v2 for OT-2/Flex: Python protocols for pipetting, serial dilutions, PCR, plate replication; control thermocycler, heater-shaker, magnetic, temperature modules. Use pylabrobot for multi-vendor.
jaechang-hits / seaborn-statistical-visualizationStatistical visualization on matplotlib + pandas. Distributions (histplot, kdeplot, violin, box), relational (scatter, line), categorical, regression, correlation heatmaps. Auto aggregation/CIs. Use plotly for interactive; matplotlib for low-level.
jaechang-hits / single-cell-annotationBest practices for single-cell RNA-seq cell type annotation including marker-based, reference-based, and automated classification approaches.
jaechang-hits / scikit-survival-analysisTime-to-event modeling with scikit-survival: Cox PH (elastic net), Random Survival Forests, Boosting, SVMs for censored data. C-index, Brier, time-dependent AUC; Kaplan-Meier, Nelson-Aalen, competing risks. Pipeline/GridSearchCV compatible.
jaechang-hits / flowio-flow-cytometryParse/write FCS (Flow Cytometry) files v2.0-3.1. Events as NumPy, channel metadata, multi-dataset files, CSV/FCS export. Use FlowKit for gating/compensation.
jaechang-hits / napari-image-viewerInteractive viewer for microscopy. Displays 2D/3D/4D arrays as Image, Labels, Points, Shapes, Tracks layers; supports annotation, plugin analysis, headless screenshots. Core visualization for Python bioimage workflows.
jaechang-hits / pyimagej-fiji-bridgePython bridge to ImageJ2/Fiji for macros, plugins (Bio-Formats, TrackMate, Analyze Particles), NumPy↔ImagePlus/ImgLib2 exchange, and ImageJ Ops. Automates Fiji headlessly from Python. Use scikit-image for pure Python without Fiji plugins; napari for visualization.
jaechang-hits / biopython-molecular-biologyMolecular biology toolkit: sequence manipulation, FASTA/GenBank/PDB I/O, NCBI Entrez, BLAST automation, pairwise/MSA alignment, Bio.PDB, phylogenetic trees. Use for batch processing, custom pipelines, format conversion, PubMed/GenBank queries.
jaechang-hits / biopython-sequence-analysisBiopython sequence analysis: parse FASTA/FASTQ/GenBank/GFF (SeqIO), NCBI Entrez (esearch/efetch/elink), remote/local BLAST, pairwise/MSA alignment (PairwiseAligner, MUSCLE/ClustalW), phylogenetic trees (Phylo). Use for gene family studies, phylogenomics, comparative genomics, NCBI pipelines.
jaechang-hits / benchling-integrationBenchling R&D Python SDK: CRUD on registry entities (DNA, RNA, proteins, custom), inventory, ELN, workflow automation. Needs Benchling account and API key. Use biopython for local sequence analysis; pubchem for chemical DBs.
jaechang-hits / pylabrobotHardware-agnostic Python liquid-handler library: portable scripts run on Hamilton STAR, Tecan Freedom EVO, Opentrons OT-2, or a simulator without vendor lock-in. For protocol automation, method dev, plate reformatting, serial dilutions, and Python lab workflows.
jaechang-hits / histolab-wsi-processingWSI processing for digital pathology. Tissue detection, tile extraction (random, grid, score-based), filter pipelines for H&E/IHC. For dataset prep, tile-based DL, slide QC. Use pathml for multiplexed imaging.
jaechang-hits / nnunet-segmentationMedical image segmentation with nnU-Net's self-configuring framework — auto-selects architecture, preprocessing, training for any modality. CT, MRI, microscopy, ultrasound in 2D, 3D full-res, 3D low-res, cascade.
jaechang-hits / omero-integrationOpen-source bio-image data management. Use the omero-py client to connect to an OMERO server, retrieve images as numpy arrays, annotate with tags and key-value pairs, manage ROIs, and feed image data into Python analysis pipelines — programmatically, no GUI.
