pybnbowtie

pybnbowtie is a library for mapping bow-tie analysis to Bayesian networks.

Dependencies

pybnbowtie has the following dependencies:

• pgmpy (with its own dependencies)
• treelib
• matploblib

Enable usage of jupyter (see also notes below)

• ipykernel

Installation of dependencies from pgmpy

• networkx
• numpy
• scipy
• pandas
• pyparsing
• torch
• statsmodels
• tqdm
• joblib
• pgmpy
• treelib

And perhaps for jupyter also

• ipykernel
• matplotlib

Installation

To install pybnbowtie from source code:

git clone https://github.com/zurheide/pybnbowtie.git
cd pybnbowtie
pip install -r requirements.txt
python setup.py install

jupyter

If pipenv is used the environment has to be installed in jupyter. Howto was found here: https://stackoverflow.com/questions/47295871/is-there-a-way-to-use-pipenv-with-jupyter-notebook

run python -m ipykernel install --user --name=my-virtualenv-name before usage of jupyter:

$ pipenv shell
$ python -m ipykernel install --user --name=my-virtualenv-name
$ jupyter notebook

Afterwards select my-virtualenv-name kernel in jupyter.