Ktplotspy
Python library for plotting Cellphonedb results. Ported from ktplots R package.
Install / Use
/learn @zktuong/KtplotspyREADME
|Docs| |PyPI| |Master| |MasterTest| |CodeCov|
ktplots-py
|logo|
Welcome! This is a super light-weight python library for plotting
CellphoneDB <https://www.github.com/ventolab/CellphoneDB/>__ results. Ported from
ktplots <https://www.github.com/zktuong/ktplots/>__ R package. For more options,
please check out the original R
package <https://www.github.com/zktuong/ktplots/>__.
The documentation is
here <https://ktplotspy.readthedocs.io/>__.
Installation
.. code:: bash
pip install ktplotspy
Support
Support is provided on a voluntary basis, as time permits.
If there are any ideas, comments, suggestions, thing you would like to know more etc., please feel free to email me at z.tuong@uq.edu.au or post in the issue tracker and I will get back to you.
Citation
If you find this useful, please cite the following paper published in Nature Protocols:
.. [Troule2025] Troulé K, Petryszak R, Cakir B, Cranley J, Harasty A, Prete M, Tuong ZK, Teichmann SA, Garcia-Alonso L, Vento-Tormo R. 2025.
CellPhoneDB v5: inferring cell–cell communication from single-cell multiomics data.,
Nature Protocols <https://www.nature.com/articles/s41596-024-01137-1>__. doi:10.1038/s41596-024-01137-1.
as well, as github repositories. Also leave a star at the
ktplotspy <https://www.github.com/zktuong/ktplotspy/>__ and the original
ktplots <https://www.github.com/zktuong/ktplots/>__ repositories!
.. |Docs| image:: https://readthedocs.org/projects/ktplotspy/badge/?version=latest :target: https://ktplotspy.readthedocs.io/en/latest/?badge=latest .. |PyPI| image:: https://img.shields.io/pypi/v/ktplotspy?logo=PyPI :target: https://pypi.org/project/ktplotspy/ .. |Master| image:: https://byob.yarr.is/zktuong/ktplotspy/version :target: https://github.com/zktuong/ktplotspy/tree/master .. |MasterTest| image:: https://github.com/zktuong/ktplotspy/actions/workflows/tests.yaml/badge.svg :target: https://github.com/zktuong/ktplotspy/actions/workflows/tests.yaml .. |CodeCov| image:: https://codecov.io/gh/zktuong/ktplotspy/branch/master/graph/badge.svg?token=661BMU1FBO :target: https://codecov.io/gh/zktuong/ktplotspy .. |logo| image:: docs/notebooks/logo.png
