Trimmomatic

This directory contains the code of Trimmomatic, a flexible read trimming tool for Illumina NGS data. The official maintainer is Anthony Bolger and the official web page is here: http://www.usadellab.org/cms/index.php?page=trimmomatic

As the code is available under the GPL, and I, Timothée Flutre, needed to make a few changes, I started working on version 0.33 of the tool, just after versioning it with git.

Installation

For the impatients: make make check make install

By default everything is installed in a directory bin/ in ${HOME}. If the bin/ directory does not exist, it will be created. To install elsewhere, use the option INSTALL, for instance: make install INSTALL="/usr/local/"