Cocolab.stanford.edu

---

layout: default

Here's how to edit this website!

Overview

1. Checkout this repo on github

2. Make changes and push to github (make sure you have collaborator privileges, and see later sections for details on specific kinds of changes)

3. Go to /afs/ir.stanford.edu/group/cocolab/cocolab.stanford.edu and pull your changes

    ssh [SUNetID]@cardinal.stanford.edu
    cd /afs/ir.stanford.edu/group/cocolab/cocolab.stanford.edu
    git pull
   

   There's a script on the server that makes the changes live after a successful merge.

Specific kinds of changes

How to add a new page to the website

1. make a markdown file, e.g. new-file.md in the top of the cocolab.stanford.edu directory

2. add this to the top of the markdown file:

    ---
    layout: default
    ---
   

3. if you want this page to appear in the navbar, add another value to the header:

    ---
    layout: default
    title: New Page
    ---
   

4. visit cocolab.stanford.edu/new-page.html.

How to add a person to the website

1. go to the file _data/cocolab.yml

2. find (or add) whatever role they play in the lab (e.g. Principal Investigator, Graduate Student, Alumni), and add a new person to that role.

    - role: [WHATEVER ROLE]
      people:
        - [OTHER PEOPLE]
        - name: New Person
          img: newPerson.jpg
          webpage: //www.stanford.edu/~newP
          bio:
            - >
              A paragraph of this person's bio.
            - >
              Another paragraph of this person's bio.
        - [OTHER PEOPLE]
   

How to add a publication to the website

1. go to the file _bibliography/cocolab.bib and add the publication.

How to add an image to the front page carousel

1. got to the file _data/carousel.yml

2. add a new image to the end of the file

    - [OTHER IMAGES]
    - image: my-new-image.jpg
      label: "A description of my new image"
      alt: "if you want, you can add a line of alt text. otherwise, the label will be the alt text."
   

How to update Noah's CV

(for now...)

1. make changes to ndg-cv.md

2. have jekyll, jekyll-scholar, and pandoc installed

3. run sh ./make-cv.bash

4. git add ndg-cv.md ndg-cv.pdf

Troubleshooting

If the website does not update within a minute or so of making these changes, this might be because the build script has stopped working. You can talk to Erin about this, or run

source /afs/ir.stanford.edu/group/cocolab/.bash_profile
jekyll build
rsync -r -a -v _site/* ../WWW/

in a terminal on the Stanford server in the /afs/ir.stanford.edu/group/cocolab/cocolab.stanford.edu directory.

Set up

To set up installing ruby gems without sudo access, these lines should be in your ~/.bash_profile (or ~/.bashrc or whatever you use):

PATH=$PATH:~/.gem/bin:~/bin
export GEM_HOME=~/.gem

Once you've re-logged on or sourceed your profile file, you can install jekyll and jekyll-scholar using gem. This site uses jekyll (2.5.3) and jekyll-scholar (4.3.3).

gem install jekyll -v 2.5.3
gem install jekyll-scholar -v 4.3.3

Note that while jekyll is compatible with GitHub pages, jekyll-scholar is not.

Here's a possible .git/hooks/post-merge script.

#!/bin/sh

export COCOHOME=/afs/ir.stanford.edu/group/cocolab
export PATH=${COCOHOME}/.gem/bin:$PATH
export GEM_HOME=${COCOHOME}/.gem
export GEM_PATH=$GEM_PATH:$GEM_HOME
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
cd /afs/ir.stanford.edu/group/cocolab/cocolab.stanford.edu/

jekyll build

rsync -r -a -v /afs/ir.stanford.edu/group/cocolab/cocolab.stanford.edu/_site/* /afs/ir.stanford.edu/group/cocolab/WWW/

For local debugging, one could run

jekyll build

and then navigate to _site/index.html. Unfortunately, the links in this repo are currently hard-coded with the assumption that all files are present at the host (in the online version, http://cocolab.stanford.edu/, in the local version file://), so further abstraction and modifications would have to be made in order to actually navigate the site locally...