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Curation

Guidelines and procedures for curation (manual and semi-automated)

Install / Use

/learn @pharmacome/Curation
About this skill

Quality Score

0/100

Supported Platforms

Universal

README

BEL Curation Procedures and Guidelines |build|

This folder contains the BEL curation procedures and guidelines developed and used during the Human Brain Pharmacome <https://pharmacome.scai.fraunhoer.de>_ project.

.. |build| image:: https://travis-ci.com/pharmacome/curation.svg?branch=master :target: https://travis-ci.com/pharmacome/curation

General BEL Coding

  • BEL Style Guide <https://github.com/pharmacome/curation/blob/master/style-guide.rst>_
  • BEL Template <https://raw.githubusercontent.com/pharmacome/curation/master/template.bel>_
  • Cookbook <https://github.com/pharmacome/curation/blob/master/cookbook.rst>_

Topic-Specific Guidelines

  • Chemical Biology <https://github.com/pharmacome/curation/blob/master/chemical-biology.rst>_
  • Genetics and Epigenetics <https://github.com/pharmacome/curation/blob/master/genetics.rst>_

Procedures

  • Re-curation <https://github.com/pharmacome/curation/blob/master/recuration.rst>_
  • Curation with INDRA <https://github.com/pharmacome/curation/blob/master/indra.rst>_
  • Error Assessment for INDRA <https://github.com/pharmacome/curation/blob/master/indra-errors.rst>_
  • Rational Enrichment <https://github.com/pharmacome/curation/blob/master/rational-enrichment.rst>_

Technologies

  • Curation using Git as a Version Control System <https://github.com/pharmacome/curation/blob/master/using-git.rst>_
  • Feedback using PyBEL and Continuous Integration <https://github.com/cthoyt/pybel-git>_

Related Skills

View on GitHub
GitHub Stars4
CategoryDevelopment
Updated3y ago
Forks2

Languages

Python

Security Score

75/100

Audited on Mar 5, 2023

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