WeberPenn

An extension of the Weber and Penn model

<figure> <img src="doc/_static/readme_image.png" alt="Alt text" /> <figcaption>3D plot realized with Openalea Visualea, see Tutorial.</figcaption> </figure>

Authors

• Christophe Pradal

Installation

Miniconda installation

Follow official website instruction to install miniconda :

https://github.com/conda-forge/miniforge

For user

mamba create -n weberpenn -c openalea3 -c conda-forge openalea.weberpenn
mamba activate weberpenn

For developer, in an existing environment

git clone https://github.com/openalea/weberpenn.git
cd weberpenn
mamba install --only-deps -c openalea3 -c conda-forge openalea.weberpenn
pip install -e .[options]

[options] is optional, and allows to install additional dependencies defined in the [project.optional-dependencies] section of your pyproject.toml file (usually "dev", or "doc", ...)

For maintainer that need clean isolated env, or to start development (i.e. before first build)

mamba env create -f ./conda/environment.yml

Tutorial

see visualea tutorial on https://openalea.readthedocs.io/en/latest/tutorials/visualea/weberpenn.html#