MAppleT

Developer - Installation

We use conda system to manage our dependencies, so first install conda on your machine.

https://docs.conda.io/en/latest/miniconda.html

Install dependencies and environement

Now, install dependencies of MappleT by create firstly a conda environment with

conda create -y -n mappleT -c openalea -c anaconda python=2.7 \
scons=2 \
openalea.sconsx \
openalea.plantgl \
openalea.lpy \
openalea.fractalysis \
openalea.misc \
boost=1.66.0 \
mpfr=3.1 \
scipy \
pillow \
nose \
xlrd \
matplotlib \
jupyter_client=5 \
cython

Activate your environement

conda activate mappleT

Continue dependencies installation with openalea noy conda released package

Plantik

git clone https://github.com/openalea-incubator/plantik
cd plantik; python setup.py install; cd ..

Structure Analysis

git clone https://github.com/openalea/StructureAnalysis/
cd StructureAnalysis/
git checkout 59332198b74380f67df0f8e7dff3be36fb1785e2
cd tool; python setup.py install; cd ..
cd stat_tool; python setup.py install; cd ..
cd sequence_analysis; python setup.py install; cd ..
cd ..

And finally ... Install MappleT !

git clone https://github.com/openalea-incubator/MAppleT
cd MAppleT
python setup.py develop

Running MappleT

Launch

lpy share/data/stocatree.lpy