Pbclip

A simple tool to fix PacBio fasta/q that was not properly split into subreads

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Install / Use

/learn @mikolmogorov/Pbclip

About this skill

Quality Score

0/100

README

pbclip

A simple tool to fix PacBio fasta/q that was not properly split into subreads. Pbclip detects the "strand switching" pattern, when the machine starts to read the same sequence but in reverse direction, like in the dot-plot below.

License

Distributed under a BSD license. See the LICENSE file for details.

Authors

Mikhail Kolmogorov, UC San Diego

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