---

name: upstream-audit description: >- Audit and update Pilot Shell upstream dependencies in installer/upstreams.yaml. Checks npm, PyPI, brew, and curl-pipe entries for newer stable versions, known security advisories, and sha256 drift. Verifies each update installs successfully before committing. Use when: "check upstreams", "update dependencies", "audit upstreams.yaml", "are our dependencies up to date", "supply chain check".

Upstream Audit

Checks every entry in installer/upstreams.yaml for newer stable versions, security advisories, and hash drift. Updates the manifest and verifies each change installs correctly.

Important

• Never update to pre-release, alpha, beta, rc, or canary versions. Only stable releases.
• Never update a curl entry's sha256 without downloading and verifying the script content first.
• Every version bump must be install-tested before writing to upstreams.yaml.
• Preserve all existing fields (comments, last_audited, soft_pin, scripts_policy, etc.) — only change version, sha256, and last_audited.

Instructions

Step 1: Load the Manifest

cat installer/upstreams.yaml

Parse the entries. Group them by source_type: npm, brew, curl, pypi.

Step 2: Check for Newer Versions

For each entry, check the latest stable version using the appropriate method:

npm packages (source_type: npm):

npm view <source_url> version 2>/dev/null
# Example: npm view @colbymchenry/codegraph version

PyPI packages (source_type: pypi):

pip index versions <name> 2>/dev/null | head -1
# Or: curl -s https://pypi.org/pypi/<name>/json | python3 -c "import sys,json; print(json.load(sys.stdin)['info']['version'])"

Homebrew formulas (source_type: brew):

brew info --json=v2 <brew_formula> 2>/dev/null | python3 -c "import sys,json; d=json.load(sys.stdin); print(d['formulae'][0]['versions']['stable'])"

curl-pipe installers (source_type: curl):

Commit-pinned entries (have commit field — extract repo URL from source_url):

# Extract repo URL from source_url (everything before /raw/ or before the commit hash path)
# Example: https://raw.githubusercontent.com/nvm-sh/nvm/COMMIT/install.sh → https://github.com/nvm-sh/nvm.git
git ls-remote <repo_url> HEAD | cut -c1-40

If HEAD differs from the current commit, download the new script, hash it, and update source_url (embed new commit), version (commit-<short>), commit, sha256.

Tag-pinned entries (version starts with v, e.g., nvm):

git ls-remote --tags <repo_url> | grep -oP 'v\d+\.\d+\.\d+$' | sort -V | tail -1

If newer tag exists, update source_url (embed new tag), version, sha256, and name if it includes the version.

Soft-pinned entries (soft_pin: true — vendor-managed live endpoints):

curl -fsSL "<source_url>" -o /tmp/upstream-audit-script.sh
shasum -a 256 /tmp/upstream-audit-script.sh
rm -f /tmp/upstream-audit-script.sh

Compare sha256 to manifest. If different → sha256 drifted, update sha256 and version label (e.g., live-YYYY-MM-DD or vendor-managed-YYYY-MM-DD). If same → no drift, just update last_audited.

For every proposed update, also inspect its published runtime requirements and release notes. A package being installable is insufficient when its executable requires a newer Node, Python, Go, libc, or OS baseline than Pilot provisions. Trace that requirement to Pilot's prerequisite/bootstrap entry and include any required runtime migration in the same audit. Treat major-version changes and new migration/status flags as capability changes that need an explicit test.

Update ALL entries' last_audited to today's date — even entries where the version didn't change. The audit date records when we last verified the version is current, not when it was last bumped.

Step 3: Check Security Advisories

For each entry with a newer version available:

npm packages:

npm audit --json --package <source_url>@<current_version> 2>/dev/null || true

Also check: WebSearch for "<package_name> CVE" or "<package_name> security vulnerability".

PyPI packages:

pip audit --requirement=<(echo "<name>==<version>") 2>/dev/null || true

Or search: WebSearch for "<package_name> CVE" or "<package_name> security advisory".

Homebrew formulas: Check the formula's source repo for security advisories.

Report any findings. If the CURRENT version has known vulnerabilities, flag as urgent.

Step 4: Install-Test Each Update

This step is mandatory. Do not skip it.

An install test proves package resolution only. After it passes, exercise the installed artifact through Pilot's real integration path:

• CLI tools: run --version plus the primary command Pilot depends on.
• MCP servers: perform an MCP initialize handshake and list or invoke the tool surface Pilot uses; a process that merely stays alive is not enough.
• Browser tools: launch a real page and perform one representative action such as a screenshot.
• Language servers/compilers: complete a handshake or compile/typecheck a small project using Pilot's actual runtime and configuration.
• Migration-aware tools: inspect their status/capability output and exercise the migration path against an existing artifact, not only a fresh install.

Use isolated temporary prefixes/profiles. Read versions back from the exact binary or generated artifact Pilot will launch, so a globally shadowing older binary cannot create a false pass.

For each version bump, verify the new version actually installs and works:

npm packages:

# Test install in a temp prefix (doesn't affect global)
npm install --prefix /tmp/upstream-audit-test <source_url>@<new_version> --ignore-scripts 2>&1
echo "exit: $?"
rm -rf /tmp/upstream-audit-test

For packages with scripts_policy: allow (like better-sqlite3):

npm install --prefix /tmp/upstream-audit-test <source_url>@<new_version> 2>&1
echo "exit: $?"
rm -rf /tmp/upstream-audit-test

curl-pipe installers:

# Download and verify sha256 — do NOT execute
curl -fsSL "<source_url>" -o /tmp/upstream-audit-script.sh
shasum -a 256 /tmp/upstream-audit-script.sh
rm -f /tmp/upstream-audit-script.sh

For commit-pinned curl entries, construct the new URL with the latest commit hash and download.

PyPI packages:

uv pip install --dry-run <name>==<new_version> 2>&1
echo "exit: $?"

Homebrew formulas: No install-test needed — brew formulas are tested by the Homebrew CI.

If any install-test fails, do not update that entry. Report the failure and move on.

Step 5: Update the Manifest AND Cross-File Pins

For each successfully verified update, edit installer/upstreams.yaml:

1. Update the version field to the new version
2. Update sha256 if applicable (curl entries — use the hash from Step 4)
3. Update last_audited to today's date (YYYY-MM-DD format)
4. For commit-pinned curl entries: update both commit and version (commit-<short_hash>)
5. For soft_pin curl entries: only update sha256 and last_audited if the script changed

Cross-file version pins that MUST stay in sync with the manifest:

These files contain hardcoded version strings that duplicate the manifest. After updating upstreams.yaml, grep for the old version and update every occurrence:

| File | What it pins | |------|-------------| | pilot/.mcp.json | npx-launched MCP servers: context7-mcp@X, open-websearch@X, fetcher-mcp@X | | install.sh | PyPI bootstrap: rich==X, certifi==X, PyYAML==X | | launcher/build.py | PyPI bootstrap: cryptography==X | | .github/workflows/supply-chain.yml | CI PyPI pin: PyYAML==X |

For curl entries with version-pinned URLs (e.g., nvm-curl), also update source_url to embed the new version in the URL path.

Verification command — find any remaining stale pins after updating:

# Extract all versions from the manifest, then grep for old versions
grep -rn "rich==\|certifi==\|cryptography==\|PyYAML==\|context7-mcp@\|open-websearch@\|fetcher-mcp@" \
  install.sh launcher/build.py pilot/.mcp.json .github/workflows/ installer/upstreams.yaml \
  --include="*.sh" --include="*.py" --include="*.json" --include="*.yaml" --include="*.yml"

The table above is a minimum allowlist, not the complete duplicate-pin search. Search the repository for every old version, package spec, formula name, and immutable commit that changed. Classify each hit as a runtime consumer, test fixture, documentation example, historical record, or unrelated value; update all live consumers. Also verify generated/client-specific copies from their installed artifacts after regeneration.

For major updates, document any config, cache, index, lockfile, or persisted state migration. Test both an existing installation and a fresh installation, and preserve user-owned configuration while migrating Pilot-owned state.

Do not change:

• scripts_policy, scripts_justification
• soft_pin, soft_pin_reason
• pin_kind, auto_upgrade
• brew_tap
• Comments in the YAML

Step 6: Validate the Manifest

uv run python -c "from installer.manifest import load; m = load(); print(f'Manifest valid: {len(m.entries)} entries')"

If validation fails, fix the YAML and retry.

Step 7: Run Installer Tests

uv run pytest installer/tests/unit/ -q

All tests must pass. If a test fails due to a version change, investigate and fix.

Then run the focused capability smokes identified in Step 4 and the repository gates for every runtime consumer changed by the audit. Do not mark an entry verified from a package-manager exit code alone.

Step 8: Report

Present a summary table:

| Entry | Type | Current | Latest | Status | Notes | |-------|------|---------|--------|--------|-------| | codegraph | npm | 0.7.3 | 0.9.4 | Updated | Install verified | | better-sqlite3 | npm | 12.9.0 | 12.9.0 | Current | — | | vtsls | npm | 0.3.0 | 0.3.1 | Updated | Install verified | | ... | ... | ... | ... | ... | ... |

Flag any:

• Security advisories found (urgent or informational)
• Install failures (version skipped, reason noted)
• sha256 drift on soft-pinned curl entries (re-pin reminder)
• Major version bumps that may have breaking changes (flag for manual review)

When NOT to Use

• For adding NEW upstream entries (that's a code change, not an audit)
• For changing source_url or source_type (structural change, needs manual review)
• For removing entries (deprecation decision, not an audit)