3dmice
Missing data imputation for longitudinal multi-variable EHR data. Paper in JAMIA.
Install / Use
/learn @luoyuanlab/3dmiceREADME
3D-MICE: integration of cross-sectional and longitudinal imputation
Requirements
Code is written in R.
Get Started
To train, run (better run as R markdown)
source('tempMICEGPEvalTr.R')
This is a wrapper code calling various subroutines that generate the training data, mask missing values, and performs 3D-MICE imputation, each step is wrapped in its own R source file and should be self-explanatory.
Similarly, to train, run (better run as R markdown)
source('tempMICEGPEvalTe.R')
Citation
@article{luo20173d,
title={3D-MICE: integration of cross-sectional and longitudinal imputation for multi-analyte longitudinal clinical data},
author={Luo, Yuan and Szolovits, Peter and Dighe, Anand S and Baron, Jason M},
journal={Journal of the American Medical Informatics Association},
volume={25},
number={6},
pages={645--653},
year={2017},
publisher={Oxford University Press}
}
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