pyplink - Module to process Plink's binary files

PyPlink is a Python module to read and write Plink's binary files. Short documentation available at https://lemieuxl.github.io/pyplink/.

Dependencies

The tool requires a standard Python installation (3.7 or higher are supported) with the following modules:

1. numpy
2. pandas

The tool has been tested on Linux only, but should work on MacOS and Windows operating systems as well.

Installation

Using pip:

pip install pyplink

Using conda (make sure Bioconda is configured; thanks to @nebfield for the recipe):

conda install pyplink

Updating

To update the module using pip:

pip install -U pyplink

To update the module using conda:

# Make sure bioconda is configured
conda update pyplink

Testing

To test the module, just perform the following command:

$ python -m pyplink.tests
.............................................
----------------------------------------------------------------------
Ran 45 tests in 0.334s

OK

Example

The following notebook contains a demonstration of the PyPlink module.