Gempipe
This is gempipe, a tool for drafting, curating and analyzing pan and multi-strain genome-scale metabolic models (GSMMs or GEMs).
Install / Use
/learn @lazzarigioele/GempipeREADME
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This is gempipe, a tool for drafting, curating and analyzing pan and multi-strain genome-scale metabolic models (GSMMs or GEMs). Please check its 📖 documentation at https://gempipe.readthedocs.io.
How to cite ✍🏼
Lazzari G., Felis G. E., Salvetti E., Calgaro M., Di Cesare F., Teusink B., Vitulo N. Gempipe: a tool for drafting, curating, and analyzing pan and multi-strain genome-scale metabolic models. mSystems. December 2025. https://doi.org/10.1128/msystems.01007-25
If you use this tool in your work, remember to specify its version.
