PORT

Pipeline Of RNA-Seq Transformations

#RNA-Seq #Normalization #Quantification<br><br>

About PORT

PORT is a resampling based read-level normalization and quantification pipeline for RNA-Seq differential expression analysis and it offers two types of normalization: GENE Normalization and EXON-INTRON-JUNCTION Normalization.

Running PORT

Please see the PORT wiki for usage, input/output files and an explanation of the pipeline.<br>

PORT is designed to be run on a compute cluster. It has been tested on SGE and LSF.