Clustergrammer2
"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
Install / Use
/learn @ismms-himc/Clustergrammer2README
Clustergrammer2 is an interactive heatmap Jupyter widget built using the widget-ts-cookiecutter library and the WebGL library regl. Clustergrammer2 is built to help researchers interactively explore single cell data (e.g. scRNA-seq). Please see Case Studies and Tutorials for examples.
Clustergrammer2 Examples
Basic Example of Running Clustergrammer2 on MyBinder
The above notebook shows how Clustergrammer2 can be used to load a small dataset and visualize a large random DataFrame. By running the notebook on MyBinder using Jupyter Lab it can also be used to visualize a user uploaded dataset. Please see the video tutorial above for more information.
For additional examples and tutorials please see:
- Case Studies and Tutorials
- Clustergrammer2-Notebooks GitHub repository
2,700 PBMC scRNA-seq
Single cell RNA-seq (scRNA-seq) is a powerful method to interrogate gene expression across th
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