miptools

This is a medical image processing toolbox for quick preprocessing of CTs and MRIs

Download the latest release pip install --upgrade miptools

Sample usage:

# import library
import miptools as mt

# preprocessing usage
mt.preprocess('./data/test', org='brain', windowing='bsb', resample=True, visualize=True)

CT Preprocessing

Currently supporting CT windowing preprocessing only. Available windows include:

• Simple windowing (window='simple')
• Brain, Subdural, Bone windowing (window='bs')
• Sigmoid windowing (window='sigmoid')

Also supporting resampling of pixel spacing to [1, 1]

Versions

Python == 3.7.2

Todo

• [ ] MRI processing
• [ ] gradient windowing for CT
• [X] add saving function
• [ ] add tests
• [ ] add normalization functions

Author

Enoch Kan/ @enochkan