Kimono
KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and can incorporate prior biological information using protein-protein Interactions.
Install / Use
/learn @cellmapslab/KimonoREADME
KiMONo
Knowledge guided multi-level network inference.
Tutorial can be found https://cellmapslab.github.io/kimono/
About
KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and can incorporate prior biological information using protein-protein Interactions.
Installation
You can either install KiMONo locally by cloning the repository or using the devtools package.
Local Installation
-
In your terminal change the working directory to the location you want to install KiMONo
-
Clone the repository:
git clone https://github.com/cellmapslab/kimono.git
- Install KiMONo in R and load the package
install.packages("yourpath/kimono/", repos = NULL, type = "source")
library(kimono)
Github Installation
- Install the devtools package and load it in R
install.packages("devtools")
library(devtools)
- Install KiMONo in R and load the package
install_github("cellmapslab/kimono")
library(kimono)
Installing dependencies CentOS
oem
CentOS needs a different version of RcppArmadillo(https://www.gitmemory.com/RcppCore) -> install.packages("RcppArmadillo", repos="https://rcppcore.github.io/drat")
