HiOrCo

Computing Higher-Order Co-occurrence patterns in microbial samples.

Installation

Can be easily installed using pip:

pip install hiorco

Usage

As simple as:

hiorco samples.tsv

You can download our example here: samples.tsv (data from the Home Microbiome Project), and check the documentation for more options and details:

hiorco -h

Credits

Daniel Machado, European Molecular Biology Laboratory (EMBL), 2019