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Proatac

Preprocessing pipeline for (sc)ATAC data

Install / Use

/learn @caleblareau/Proatac
About this skill

Quality Score

0/100

Supported Platforms

Universal

README

<p align="left"> <br><br><br> <img src="docs/content/media/logo.png" width="50%"/> </p>

Build Status PyPI version Documentation Status License: MIT DOI

This package is maintained by Caleb Lareau in the Buenrostro Lab. Source code is made freely available and a packaged install version is provided through PyPi. <br><br>

About

The proatac package implements our data processing and quality control pipeline bulk ATAC-Seq, single cell ATAC-Seq, and droplet-based ATAC-Seq data. <br><br>

Workflow Overview

A detailed description of the workflow including a description of various parameter settings is discussed in depth in the proatac documentation. Below is a brief overview of

proatac_overview <br><br>

Installation/Documentation/FAQ/.etc

Check out the proatac documentation for detailed installation instructions, dependency configuration, and other <br><br>

Questions/comments/feedback

are always welcomed. The easiest way for us to have correspondence (if appropriate/interesting for the public) is through raising a new issue on the GitHub source. For private concerns, email Caleb. <br><br> proatac logo made freely with logomakr these blue and red color definitions. <br><br><br>

Related Skills

View on GitHub
GitHub Stars10
CategoryDevelopment
Updated4y ago
Forks2

Languages

Python

Security Score

80/100

Audited on Feb 22, 2022

No findings