Bio2BEL DrugBank |build| |coverage| |documentation| |zenodo|

Converts DrugBank 5.0 to BEL.

Installation |pypi_version| |python_versions| |pypi_license|

bio2bel_drugbank can be installed easily from PyPI <https://pypi.python.org/pypi/bio2bel_drugbank>_ with the following code in your favorite terminal:

.. code-block:: sh

$ python3 -m pip install bio2bel_drugbank

or from the latest code on GitHub <https://github.com/bio2bel/drugbank>_ with:

.. code-block:: sh

$ python3 -m pip install git+https://github.com/bio2bel/drugbank.git@master

Setup

.. warning:: DrugBank requires a bit of downloading and file organization. Will be documented soon.

Python REPL

.. code-block:: python

    >>> import bio2bel_drugbank
    >>> drugbank_manager = bio2bel_drugbank.Manager()
    >>> drugbank_manager.populate()

Command Line Utility

.. code-block:: bash

bio2bel_drugbank populate

Citations

• Wishart, D. S., et al. (2018). DrugBank 5.0: a major update to the DrugBank database for 2018 <https://doi.org/10.1093/nar/gkx1037>_. Nucleic Acids Research, 46(D1), D1074–D1082.

.. |build| image:: https://travis-ci.org/bio2bel/drugbank.svg?branch=master :target: https://travis-ci.org/bio2bel/drugbank :alt: Build Status

.. |documentation| image:: http://readthedocs.org/projects/bio2bel-drugbank/badge/?version=latest :target: http://bio2bel.readthedocs.io/projects/drugbank/en/latest/?badge=latest :alt: Documentation Status

.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_drugbank.svg :alt: Current version on PyPI

.. |coverage| image:: https://codecov.io/gh/bio2bel/drugbank/coverage.svg?branch=master :target: https://codecov.io/gh/bio2bel/drugbank?branch=master :alt: Coverage Status

.. |climate| image:: https://codeclimate.com/github/bio2bel/drugbank/badges/gpa.svg :target: https://codeclimate.com/github/bio2bel/drugbank :alt: Code Climate

.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_drugbank.svg :alt: Stable Supported Python Versions

.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_drugbank.svg :alt: MIT License

.. |zenodo| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.1243727.svg :target: https://doi.org/10.5281/zenodo.1243727 :alt: Zenodo DOI