Bio2BEL |build| |coverage| |docs| |zenodo|

Bio2BEL is a project aimed at bringing biological databases and other structured knowledge sources in a wide variety of schemata into the unified framework of the Biological Expression Language <https://biological-expression-language.github.io/>_ [1]_.

Two important places to look:

• How to make a Bio2BEL Repository <http://bio2bel.readthedocs.io/en/latest/tutorial.html>_
• How to use the CLI <http://bio2bel.readthedocs.io/en/latest/cli.html>_

Installation |pypi_version| |python_versions| |pypi_license|

Download the latest stable code from PyPI <https://pypi.org/project/bio2bel>_ with:

.. code-block:: sh

$ python -m pip install bio2bel

or get the latest from GitHub with:

.. code-block:: sh

$ git clone https://github.com/bio2bel/bio2bel.git $ cd bio2bel $ python -m pip install -e .

or check the installation instructions <http://bio2bel.readthedocs.io/en/latest/#installation>_.

Citation

If you find Bio2BEL useful for your work, please consider citing:

.. [1] Hoyt, C. T., et al. (2019). Integration of Structured Biological Data Sources using Biological Expression Language <https://doi.org/10.1101/631812>_. bioRxiv, 631812.

.. |build| image:: https://travis-ci.com/bio2bel/bio2bel.svg?branch=master :target: https://travis-ci.com/bio2bel/bio2bel :alt: Build Status

.. |coverage| image:: https://codecov.io/gh/bio2bel/bio2bel/coverage.svg?branch=master :target: https://codecov.io/gh/bio2bel/bio2bel?branch=master :alt: Coverage Status

.. |docs| image:: http://readthedocs.org/projects/bio2bel/badge/?version=latest :target: http://bio2bel.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status

.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel.svg :alt: Stable Supported Python Versions

.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel.svg :alt: Current version on PyPI

.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel.svg :alt: MIT License

.. |zenodo| image:: https://zenodo.org/badge/99800349.svg :target: https://zenodo.org/badge/latestdoi/99800349