Breseq
breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
Install / Use
/learn @barricklab/BreseqREADME
Users: See the online breseq documentation for installation instructions, examples of using breseq, and tutorials that include interpreting breseq results.
Developers: Start on the Developer page page to learn how to get set up for contributing.
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