OMBlast

!!! NOTE: the latest OMBlast has been integrated into OMTools. Please download/clone OMBlast from OMTools !!!

An alignment tool for optical mapping data

Please refer to "OMBlastManual.pdf" for more details.

Quick steps

1. Compile the OMBlast package in the OMBlast folder: javac -d bin -sourcepath src -cp "lib/*" @classes
2. Build a runnable jar file for OMBlast: jar cvfm OMBlast.jar manifest -C bin .
3. Run OMBlast: java -jar OMBlast.jar
4. Run other scripts: (Linux) java -cp “bin:lib/” aldenjava.script.ScriptName (Windows) java -cp “bin;lib/” aldenjava.script.ScriptName