TransProPy

<img src="image/TransProPy_Pylogo.png" alt="TransProPy Logo" width="250" height="250" align="right"> A python package that integrate algorithms and various machine learning approaches to extract features (genes) effective for classification and attribute them accordingly.

Installation

pip3 install TransProPy
pip3 install git+https://github.com/SSSYDYSSS/TransProPy.git

Usage

# e.g.: 
from TransProCalc import my_function
my_function()

Citation

If you use TransPro in your research, please cite:

Dongyue Yu; Chen Li; Shuo Yan; Lujiale Guo; Jingyu Liang; Shengquan Chen*; Wenjun Bu* (2026). Comparative Evaluation of Differential Gene Selection Methods in Transcriptomics: Bias Correction and Visualization with TransPro. Manuscript in preparation.

Correspondence:

Shengquan Chen — School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, China.

Wenjun Bu — Institute of Entomology, College of Life Sciences, Nankai University, Tianjin 300071, China.

More examples see

TransProPy Manual：https://sssydysss.github.io/TransProPyBook/

Contributing

Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.

License

This project is licensed under the BSD 3-Clause License - see the LICENSE file for details.