EcholocatoR

<img src='https://github.com/RajLabMSSM/echolocatoR/raw/master/inst/hex/hex.png' title='Hex sticker for echolocatoR' height='300'><br> <br> <br> <a href='https://app.codecov.io/gh/RajLabMSSM/echolocatoR/tree/master' target='_blank'><img src='https://codecov.io/gh/RajLabMSSM/echolocatoR/branch/master/graphs/icicle.svg' title='Codecov icicle graph' width='200' height='50' style='vertical-align: top;'></a>

<h4> Authors: <i>Brian Schilder, Jack Humphrey, Towfique Raj</i> </h4>

echolocatoR: Automated statistical and functional fine-mapping with extensive access to genome-wide datasets.

The echoverse

echolocatoR is part of the echoverse, a suite of R packages designed to facilitate different steps in genetic fine-mapping.

echolocatoR calls each of these other packages (i.e. “modules”) internally to create a unified pipeline. However, you can also use each module independently to create your own custom workflows.

echoverse dependency graph

<img src="https://raw.githubusercontent.com/RajLabMSSM/echolocatoR/master/man/figures/echoverse.png" alt="echoverse dependency graph" height="400px" style="border-radius: 20px;">

Made with echodeps, yet another echoverse module. See here for the interactive version with package descriptions and links to each GitHub repo.

echoverse status

| Package | Level | Version | CI Status | Code Coverage | Runners | |:---|:---|:---|:---|:---|:---| | echolocatoR | 4 | | | | | | catalogueR | 3 | | | | | | echoAI | 3 | | | | | | echoannot | 3 | | | | | | echofinemap | 3 | | | | | | echoplot | 3 | | | | | | downloadR | 2 | | | | ![Windows](https://img.shields.io/badge/-444444?style=flat-square&logo=data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHZpZXdCb3g9IjAgMCAyNCAyNCI+PHBhdGggZmlsbD0id2hpdGUiIGQ9Ik0wIDMuNDQ5TDkuNzUgMi4xdjkuNDUxSDBtMTAuOTQ5LTkuNjAyTDI0IDB2MTEuNEgxMC45NDlNMCAxMi42aDkuNzV2OS40NTFMMCAyMC42OTlNMTAuOTQ5IDEyLjZIMjRWMjRsLTEy