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heRomod - A Package for Health Economic Modeling

The heRomod package allows users to develop and run cost-effectiveness models in R and is the calculation engine used in the heRo web-based modeling platform. A fork of the HEEMOD package.

You can install the latest released version from github with:

Developing Locally

If you want to run the package locally from source

1. Install R (>= 3.4.0) for your platform.

   1. For Windows users, it is recommended to check Save version number in registry during installation so that the R extension can find the R executable automatically.
   2. For mac users, use brew to install R and dependencies in terminal
      1. brew install r
      2. brew install libgit2 harfbuzz fribidi freetype2 libpng libtiff libjpeg pandoc

2. Open an R terminal executing r in your terminal

   • In some shells, r is a built-in command to re-run the last command.
     • You can verify it running which r.
     • If the response is r: shell built-in command you will need to alias it.
     • First check the path: whereis r
     • Then open you rc file (.bashrc, .zshrc or the one you use it) and add: alias r='<your-path-to-r>'.
     • For example: alias r='/opt/homebrew/bin/r'
     • Restart your shell

3. Run the following into your R terminal:

   install.packages("remotes")
   install.packages("languageserver")
   install.packages("usethis")
   install.packages("pkgdown")
   install.packages("devtools")
   remotes::install_github("PolicyAnalysisInc/herotools")
   remotes::install_github("PolicyAnalysisInc/herosurv")
   

4. Install the R extension for VS Code from the VS Code Extension Marketplace

5. Test the build command

   1. devtools::install(dependencies=F)
   2. devtools::build(vignettes=T)

6. Run the tests (note - this will take significant time, especially running the heRo model)

   1. devtools::test()

Running the heroMod package locally

1. Install the Github package manager and Hero remotes

   if(!require(remotes)) {
     install.packages('remotes')
   }
   Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true")
   remotes::install_github("PolicyAnalysisInc/herotools")
   remotes::install_github("PolicyAnalysisInc/herosurv")
   

2. Install heromod (if prompted you can install "All")

   remotes::install_github("PolicyAnalysisInc/heRomod")
   

Features

• Support for Markov cohort and partitioned-survival models.
• Comprehensive tools for defining and operation of survival distribtions.
• Probabilistic uncertainty analysis (PSA).
  • Cost-effectiveness acceptability curves (CEAC).
  • Expected value of perfect information (EVPI).
  • Expected value of partially perfect information (EVPPI).
• Deterministic sensitivity analysis (DSA).
• Value-based pricing analysis (VBP).

Devs

• Jordan Amdahl

Contributors

• Kevin Zarca and Antoine Filipović-Pierucci (authors of HEEMOD).
• Matthew Wiener
• Zdenek Kabat
• Vojtech Filipec
• Yonatan Carranza Alarcon
• Vince Daniels
• Fernando Alarid