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Molecules

Common molecule fragments for visualization in Avogadro

Install / Use

/learn @OpenChemistry/Molecules
About this skill

Quality Score

0/100

Supported Platforms

Universal

README

Molecules

Common molecule fragments including a variety of organic functional groups:

  • alcohols
  • aldehydes
  • alkanes
  • alkenes
  • alkynes
  • amides
  • amines
  • amino acids
  • aromatics
  • carbamides
  • carbohydrates
  • carboxylic acids
  • coordination
  • cyclic alkanes
  • cyclic alkenes
  • cyclic sugars
  • ethers
  • fatty acids
  • fullerenes
  • heteroaromatics
  • ketones
  • ligands
  • macrocycles
  • nitriles
  • nucleobases
  • steroids
  • sulfoxides
  • thiols

All molecules are made available the BSD license. Most are from the Blue Obelisk Chemical Structures set. Where possible, optimized geometries are made available using the Pitt Quantum Repository

View on GitHub
GitHub Stars17
CategoryDevelopment
Updated1y ago
Forks7

Security Score

80/100

Audited on Mar 7, 2025

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