TriFECTA

Tri - Fantastical Emporium of Clinical Trial Assortments

API Documentation

What is TriFECTA?

TriFECTA is a curation tools for clinical trials

How to use TriFECTA

Workflow Diagram

File structure diagram

Define paths, variable names, etc

Installation options:

We provide two options for installing <this software>: Docker or directly from Github.

Docker

The Docker image contains <this software> as well as a webserver and FTP server in case you want to deploy the FTP server. It does also contain a webOverview server for testing the <this software> main website (but should only be used for debug purposes).

1. docker pull ncbihackathons/<this software> command to pull the image from the DockerHub
2. docker run ncbihackathons/<this software> Run the docker image from the master shell script
3. Edit the configuration files as below

Installing <this software> from Github

1. git clone https://github.com/NCBI-Hackathons/<this software>.git
2. Edit the configuration files as below
3. sh server/<this software>.sh to test
4. Add cron job as required (to execute <this software>.sh script)

Configuration

Examples here

Testing

We tested four different tools with <this software>. They can be found in server/tools/ .

API

There is also a Docker image for hosting the main website. This should only be used for debug purposes.

1. git clone https://github.com/NCBI-Hackathons/<this software>.git
2. cd Website
3. docker build --rm -t <this software>/website .
4. docker run -t -i <this software>/website