Stride
STRIDE: Protein secondary structure assignment from atomic coordinates
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STRIDE: Protein secondary structure assignment from atomic coordinates
About STRIDE:
STRIDE [1] is a program to recognize secondary structural elements in proteins from their atomic coordinates. It performs the same task as DSSP by Kabsch and Sander [2] but utilizes both hydrogen bond energy and mainchain dihedral angles rather than hydrogen bonds alone. It relies on database-derived recognition parameters with the crystallographers' secondary structure definitions as a standard-of- truth. Please see Frishman and Argos [1] for detailed description of the algorithm.
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Frishman,D & Argos,P. (1995) Knowledge-based secondary structure assignment. Proteins: structure, function and genetics, 23,
566-579. -
Kabsch,W. & Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22: 2577-2637.
