CellFie

An alternative approach to capture the breadth of cellular functions by performing a functional analysis of existing biological networks.

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/learn @LewisLabUCSD/CellFie

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README

CellFie: Cellular Functions InferencE

CellFie is a computational framework to quantity a cells' metabolic functions.

This framework is available as a web-based module in the list of tools of GenePattern. See here information about the GenePattern module

The source code is running on Matlab. See here information about how to run Cellfie using Matlab

Detailed explanations of the methods and tools related to CellFie are available on the wiki section of this repository

We welcome any comments, bug reports, and feature requests. Please send all feedback to arichelleres@gmail.com

How to cite?

A. Richelle, B.P. Kellman, A.T. Wenzel, A.W.T. Chiang, T.Reagan, J.M. Gutierrez, C. Joshi, S. Li, J.K. Liu, H. Masson, J. Lee, Z. Li, L. Heirendt, C. Trefois, E.F. Juarez, T. Bath, D. Borland, J.P. Mesirov, K. Robasky, N.E. Lewis. Model-based assessment of mammalian cells metabolic functionalities using omics data. Cell Reports Methods; doi: https://doi.org/10.1016/j.crmeth.2021.100040

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