GraphGMM
An extension to geometric morphometric libraries oriented towards the integration of Graph Theory into the analysis of landmark data. Graph-based Geometric Morphometrics is additionally accompanied by other non-linear dimensionality reduction algorithms.
Install / Use
/learn @LACourtenay/GraphGMMREADME
GraphGMM
An extension to geometric morphometric libraries oriented towards the integration of Graph Theory into the analysis of landmark data. Graph-based Geometric Morphometrics is additionally accompanied by other non-linear dimensionality reduction algorithms.
<i> Author
Lloyd A. Courtenay
ladc1995@gmail.com
ORCID
https://orcid.org/0000-0002-4810-2001
Current Afiliations:
Universidad de Salamanca [USAL]
</i>This code was designed and prepared for the study by: <b> Courtenay, L.A.; Aramendi, J.; González-Aguilera, D. (2024) A Graph Based Geometric Morphometric approach to the analysis of primate radii: A new mathematical model for the ordination of landmark data. </b>
TIDOP research group website: http://tidop.usal.es/
<b>Dependencies: </b>
- igraph (>= 1.2.0),
- abind (>= 1.4),
- RTriangle (>= 1.6),
- ggplot2 (>= 3.3.0),
- philentropy (>= 0.4),
- Rtsne (>= 0.15),
- rgl (>= 0.105.0),
- dplyr (>= 1.0),
- sm (>= 2.2),
- shapes (>= 1.2.0),
- robustbase (>= 0.9),
- MASS (>= 7.3),
- Rvcg (>= 0.20),
- RColorBrewer (>= 1.0),
- car (>= 3.0),
- magrittr (>= 2.0),
- Morpho (>= 2.0)
Comments, questions, doubts, suggestions and corrections can all be directed to L. A. Courtenay at the email provided above.
License
This project is licensed under the GNU Affero General Public License v3.0. See the LICENSE file for details.
<b> Copyright (C) 2022 Lloyd Courtenay </b>
This program is free software: you can redistribute it and/or modify it under the terms of the GNU Affero General Public License as published by the Free Software Foundation, version 3.
