Coding and Statistics Club Shared Content

https://docs.google.com/document/d/1xk61EK3eyOAcplCuKVRDbj9dk52awN1hFaP1yzGRXc0/edit#

Classes

• Docker 22/09/2020 Docker is great for creating portable and consistent computational environments. In this session, Alex Guizar gave a short introduction on the basics of Docker and how it can be used to support scientific research and reproducibility.
• tidyverse II 11/08/2020 Builds upon tidyverse intro with a focus on the purrr and tidy packages.
• tidyverse intro 28/07/2020 The tidyverse is a collection of R packages designed to make data analysis easier, cleaner and more efficient short class
• Linux/Bash 20/07/2020 Bash and cluster computing can be invaluable for processing large amounts of data. Anne Thomas gave a short class on the topic.
• rmarkdown 23/06/2020 Rmarkdown is a useful tool for producing and publishing reproducable research. O'Neill Tun gave a short class on the basics.
• git 20/06/2020 a version control software used to track and archive changes to files, very useful for managing research code and then sharing on servers. Jonathan Williams gave a short class on how the basics of git and how to use it to track and publish code for an individual.

Code for Group Publications

• 3D Segmentation of Trees Through a Flexible Multiclass Graph Cut Algorithm, Williams et al. (2019) IEEE TGRS github repo
• SLIC-UAV: A Method for monitoring recovery in tropical restoration projects through identification of signature species using UAVs, Williams et al. (2020) arXiv preprint github repo