Notebooks
Examples and tutorials on accessing environmental data and developing and deploying ecological modelling workflows
Install / Use
/learn @EcoCommonsAustralia/NotebooksREADME
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<br>🐢 Hello
EcoCommons is a national digital platform hosted by QCIF Ltd and supported by the Australian Research Data Commons, an NCRIS facility. The platform provides a range of services to support the Australian ecological research community, including access to data and ecological modelling tools.
This repository contains examples and tutorials with the objective of mirroring the functionalities offered in the EcoCommons platform.
<!--- AUTOGENERATED-NOTEBOOKS-TABLE --> <!--- WARNING: DO NOT EDIT THIS TABLE MANUALLY. IT IS AUTOMATICALLY GENERATED. HEAD OVER TO CONTRIBUTING.MD FOR MORE DETAILS ON HOW TO MAKE CHANGES PROPERLY. -->🐨 Ecological Modelling (5 notebooks)
| notebook | notebook file | open in Google colab / ARDC Jupyter Notebook Service | complementary materials | repository / paper |
|:------------:|:---------------:|:-------------------------------------------------:|:---------------------------:|:----------------------:|
| GLM | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_GLM.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_GLM.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | 
| 
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| Extent and Area of Occurrence / Occupancy | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/eoo_aoo.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/eoo_aoo.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | |
| Random Forest | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_RF.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_RF.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | |
| Single-Species Single-Season Occupancy Model - Conceptual | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_Occupancy_conceptual.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_Occupancy_conceptual.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | |
| Single-Species Single-Season Occupancy Model - Practical | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_Occupancy_practical.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/EC_Occupancy_practical.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | |
🌍 Geo/ecological skills (13 notebooks)
| notebook | notebook file | open in Google colab / ARDC Jupyter Notebook Service | complementary materials | repository / paper |
|:------------:|:---------------:|:-------------------------------------------------:|:---------------------------:|:----------------------:|
| Marxan Connect | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | 
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| Environmental Data Preparation (Raster) | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/raster_preparation.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/raster_preparation.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | |
| Imbalanced dataset (Part 1) | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/imbalanced_data_part1.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/imbalanced_data_part1.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/quartomd.png" width="40%"></a> | | | |
| Imbalanced dataset (Part 2) | <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/imbalanced_data_part2.ipynb"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main/assets/jupyter_notebook.png" width="40%"></a> <a href="https://github.com/ecocommonsaustralia/notebooks/blob/main/notebooks/imbalanced_data_part2.qmd"><img src="https://github.com/ecocommonsaustralia/notebooks/raw/main
