Toil
A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).
Install / Use
/learn @DataBiosphere/ToilREADME
.. image:: https://flat.badgen.net/https/ucsc-ci.com/api/v4/projects/3/jobs/artifacts/master/raw/badges1.2/required.json%3Fjob=cwl_badge%26search_recent_successful_pipelines=true?icon=commonwl&label=CWL%201.2%20Conformance :alt: Toil CWL 1.2 Conformance Badge :target: https://github.com/common-workflow-language/cwl-v1.2/blob/main/CONFORMANCE_TESTS.md
.. image:: https://badges.gitter.im/bd2k-genomics-toil/Lobby.svg :alt: Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby :target: https://gitter.im/bd2k-genomics-toil/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system,
written entirely in Python, and designed around the principles of functional
programming. It supports running workflows written in either Common Workflow Language (CWL) 1.0-1.2 or
Workflow Description Language (WDL) 1.0-1.1, as well as having its own rich Python API for writing workflows against.
It supports running workflows locally on your system (e.g. a laptop), on an HPC cluster, or in the cloud.
- Check the
website_ for a description of Toil and its features. - Full documentation for the latest stable release can be found at
Read the Docs_. - Please subscribe to low-volume
announce_ mailing list so we keep you informed - Google Groups discussion
forum_ - See our occasional
blog_ for tutorials. - Use
biostars_ channel for discussion.
.. _website: http://toil.ucsc-cgl.org/ .. _Read the Docs: https://toil.readthedocs.io/en/latest .. _announce: https://groups.google.com/forum/#!forum/toil-announce .. _forum: https://groups.google.com/forum/#!forum/toil-community .. _blog: https://toilpipelines.wordpress.com/ .. _biostars: https://www.biostars.org/t/toil/ .. _CWL: https://www.commonwl.org/ .. _WDL: https://openwdl.org/
Notes:
- Toil moved from https://github.com/BD2KGenomics/toil to https://github.com/DataBiosphere/toil on July 5th, 2018.
- Toil dropped Python 2.7 support on February 13, 2020 (the last working py2.7 version is 3.24.0).
