Fcswrite
Python package for writing flow cytometry standard (.fcs) files
Install / Use
/learn @DC-analysis/FcswriteREADME
fcswrite
|PyPI Version| |Build Status| |Coverage Status|
fcswrite allows you to write .fcs files, a file format used in flow cytometry.
Currently, fcswrite partially supports the FCS3.0 <https://doi.org/10.1002%2F%28SICI%291097-0320%2819970601%2928%3A2%3C118%3A%3AAID-CYTO3%3E3.0.CO%3B2-B>__
file format - Contributions to fcswrite are welcome.
Compatibility
fcswrite was tested (not thoroughly) with these softwares/libraries:
- FlowJo:
<https://www.flowjo.com/>__ - Flowing Software:
<http://flowingsoftware.btk.fi>__ - fcsparser:
<https://pypi.org/project/fcsparser/>__ (and thusFlowCytometryTools <https://pypi.org/project/FlowCytometryTools/>__) - Python Flow Cytometry (FCM) Tools:
<https://pypi.python.org/pypi/fcm>__ (please note that FCM is horribly outdated)
Installation
Install with pip: ::
pip install fcswrite
Requirements:
- Python >= 3.6
numpy <https://github.com/numpy/numpy>__
Testing
Running tests
::
pip install -r tests requirements
pytest tests
.. |PyPI Version| image:: https://img.shields.io/pypi/v/fcswrite.svg :target: https://pypi.python.org/pypi/fcswrite .. |Build Status| image:: https://img.shields.io/github/actions/workflow/status/DC-analysis/fcswrite/check.yml :target: https://github.com/DC-analysis/fcswrite/actions?query=workflow%3AChecks .. |Coverage Status| image:: https://img.shields.io/codecov/c/github/DC-analysis/fcswrite/master.svg :target: https://codecov.io/gh/DC-analysis/fcswrite
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