<p align="center"> <a href="https://github.com/Clinical-Genomics/genotype"> <img width="240px" height="180px" src="artwork/icon.png"/> </a> </p>

Genotype

Manage SNP calling comparisons at Clinical Genomics. The package exposes a CLI and a bare bones web interface to visualize results stored in a SQLite database.

Install

$ conda install -c bioconda pysam pyyaml sqlalchemy flask
$ pip install genotype

Help?

Please check out the documentation