Fadapa

Welcome to Fadapa

FAstqc DAta PArser - The Easiest way to parse FastQC results.

|Build| |Coverage|

Demo

Check out this iPython Notebook <http://nbviewer.ipython.org/github/fadapa/fadapa/blob/master/demo/Parsing%20FastQC%20Output%20Data%20With%20Fadapa!.ipynb/>_ for demo.

Installation

1. Recomended way to install is using pip ::

   pip install fadapa

2. Alternatively you can install with esay_install ::

   easy_install fadapa

3. You can also install from Github source code. ::

   cd git clone https://github.com/fadapa/fadapa.git cd fadapa python setup.py install

Usage

.. code-block:: python

# import fadapa
from fadapa import Fadapa

#load file
f = Fadapa('/path/to/fastqc_output_file.txt')

#get file name
print(f.file_name)

#get entire content
print(f.content())

#get all module names and their status
print(f.summary())

#get raw data of any module
print(f.raw_data('module name'))

#get cleaned data of any module
print(f.clean_data('module name'))

.. |Build| image:: https://api.travis-ci.org/fadapa/fadapa.png?branch=master :target: http://travis-ci.org/fadapa/fadapa/ .. |Coverage| image:: https://coveralls.io/repos/fadapa/fadapa/badge.png?branch=master :target: https://coveralls.io/r/fadapa/fadapa?branch=master