508 skills found · Page 6 of 17
google-deepmind / chembl-databaseQuery the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures
google-deepmind / gtex-databaseUse when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.
google-deepmind / human-protein-atlas-databaseUse when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).
google-deepmind / literature-search-europepmcSearch Europe PMC for scientific literature and download open-access full texts and PDFs. Retrieve full-text XML/plain text by PMCID, get citation lists and bibliography.
google-deepmind / ncbi-sequence-fetchRetrieve protein and nucleotide sequences from NCBI databases using E-utilities. Supports direct accession lookup, CDS translation, gene+organism search, locus lookup, PubMed-linked sequences, patent protein extraction, and organism+length fallback search
google-deepmind / openfda-databaseQuery, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparency data.
google-deepmind / pdb-databaseUse when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands). Supports searching by sequence similarity, structure similarity, chemical and other attributes.
google-deepmind / pubmed-databaseSearch PubMed for scientific literature, including published clinical trials. Fetch abstracts and full text. Link published research to biological databases (gene, protein, nucleotide, PubChem) to discover associations between papers and specific compounds or genes.
google-deepmind / encode-ccres-databaseQuery the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments and files (ChIP-seq peaks, etc.)
google-deepmind / literature-search-openalexQuery the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords
google-deepmind / opentargets-databaseQuery Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.
google-deepmind / uniprot-databaseAccess protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef
google-deepmind / ensembl-databaseQuery the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP).
google-deepmind / pubchem-databaseQuery PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics
google-deepmind / quickgo-databaseQuery the QuickGO and Evidence & Conclusion Ontology (ECO) REST API. Use this when you need to map genes to biological processes, molecular functions, or cellular components, find genes associated with a specific pathway/GO term, or explore the Gene Ontology hierarchy.
google-deepmind / clinical-trials-databaseQuery ClinicalTrials.gov via APIv2
google-deepmind / jaspar-databaseQuery the JASPAR database for Transcription Factor (TF) binding profiles
google-deepmind / reactome-databaseQuery the Reactome database (Analysis and Content Services)
google-deepmind / unibind-databaseQueries the UniBind database for experimentally validated transcription factor (TF) binding sites
google-deepmind / alphafold-database-fetch-and-analyzeRetrieve and analyze AlphaFold predicted structures for a protein
google-deepmind / gnomad-databaseQuery the Genome Aggregation Database (gnomAD)
google-deepmind / string-databaseQuery the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology
google-deepmind / foldseek-structural-searchPerforms 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API. Use ONLY when the user provides a physical 3D coordinate file (.cif, .mmcif, or .pdb) and wants to find structurally similar proteins.
google-deepmind / protein-sequence-msaPerforms multiple sequence alignment of proteins with EBI Clustal Omega
microsoft / azure-resource-manager-mysql-dotnetAzure MySQL Flexible Server SDK for .NET. Database management for MySQL Flexible Server deployments. Use for creating servers, databases, firewall rules, configurations, backups, and high availability.
microsoft / azure-resource-manager-postgresql-dotnetAzure PostgreSQL Flexible Server SDK for .NET. Database management for PostgreSQL Flexible Server deployments. Use for creating servers, databases, firewall rules, configurations, backups, and high availability.
microsoft / azure-postgres-tsConnect to Azure Database for PostgreSQL Flexible Server from Node.js/TypeScript using the pg (node-postgres) package. Use for PostgreSQL queries, connection pooling, transactions, and Microsoft Entra ID (passwordless) authentication.
microsoft / azure-resource-manager-cosmosdb-dotnetAzure Resource Manager SDK for Cosmos DB in .NET. Use for MANAGEMENT PLANE operations: creating/managing Cosmos DB accounts, databases, containers, throughput settings, and RBAC via Azure Resource Manager
microsoft / azure-resource-manager-sql-dotnetAzure Resource Manager SDK for Azure SQL in .NET. Use for MANAGEMENT PLANE operations: creating/managing SQL servers, databases, elastic pools, firewall rules, and failover groups via Azure Resource Manager
microsoft / azure-cosmos-javaAzure Cosmos DB SDK for Java. NoSQL database operations with global distribution, multi-model support, and reactive patterns. Triggers: "CosmosClient java", "CosmosAsyncClient", "cosmos database java", "cosmosdb java", "document database java".
