12,427 skills found · Page 378 of 415
jaechang-hits / exploratory-data-analysisMethodology for exploratory data analysis on scientific files. Decision frameworks by data type (tabular, sequence, image, spectral, structural, omics), quality assessment, report generation, format detection across 200+ formats
jaechang-hits / citation-managementSelecting a reference manager and applying citation styles. Compares Zotero, Mendeley, EndNote, Paperpile; covers APA/Vancouver/ACS/Nature styles, DOI management, citation tracking, and Word/Google Docs/LaTeX integration
jaechang-hits / clinical-decision-support-documentsGuidelines for clinical decision support (CDS) documents: biomarker-stratified cohort analyses and GRADE-graded treatment reports. Covers structure, executive summaries, evidence grading (1A–2C), stats (HR, CI, survival), and biomarker integration.
jaechang-hits / scientific-brainstormingStructured ideation methods: SCAMPER, Six Thinking Hats, Morphological Analysis, TRIZ, Biomimicry, plus more. Decision framework for picking methods by challenge type (stuck, improving, systematic exploration, contradiction)
jaechang-hits / scientific-manuscript-writingScientific manuscript writing: IMRAD, citation styles (APA/AMA/Vancouver/IEEE), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA/ARRIVE), writing principles (clarity/conciseness/accuracy), venue-specific style. For LaTeX see companion assets.
jaechang-hits / scientific-schematicsDesigning scientific schematics, diagrams, and graphical abstracts. Covers tool selection (BioRender, Inkscape, Affinity, PowerPoint), design principles for pathway diagrams, mechanism schematics, experimental workflows, and journal graphical abstracts.
jaechang-hits / sar-analysisStructure-activity relationship (SAR) analysis guide for drug discovery including molecular descriptor analysis, scaffold analysis, and activity cliff detection.
jaechang-hits / depmap-crispr-essentialityDepMap CRISPR gene effect (Chronos) analysis: sign convention for essentiality, per-gene NaN-safe Spearman correlation, data loading/alignment. For general NaN-safe correlation see nan-safe-correlation; for quality filtering see degenerate-input-filtering.
jaechang-hits / general-figure-guideUniversal QA checklist for generated scientific plots: overlapping labels, clipped text, missing axes/legends, overcrowded data, and cross-journal resolution/format guidance.
jaechang-hits / hypothesis-generationStructured hypothesis formulation: turn observations into testable hypotheses with predictions, propose mechanisms, design experiments. Follows the scientific method. Use scientific-brainstorming for open ideation; hypogenic for automated LLM hypothesis testing on datasets.
jaechang-hits / peer-review-methodologyStructured peer review of manuscripts and grants. 7-stage evaluation: initial assessment, section review, statistical rigor, reproducibility, figure integrity, ethics, writing. Covers CONSORT/STROBE/PRISMA and report structure.
giuseppe-trisciuoglio / drawio-logical-diagramsCreates professional logical flow diagrams and logical system architecture diagrams using draw.io XML format (.drawio files)
giuseppe-trisciuoglio / aws-sdk-java-v2-bedrockProvides Amazon Bedrock patterns using AWS SDK for Java 2.x. Invokes foundation models (Claude, Llama, Titan), generates text and images, creates embeddings for RAG, streams real-time responses, and configures Spring Boot integration
giuseppe-trisciuoglio / clean-architectureProvides implementation patterns for Clean Architecture, Hexagonal Architecture (Ports & Adapters), and Domain-Driven Design in Java 21+ Spring Boot 3.5+ applications
giuseppe-trisciuoglio / langchain4j-rag-implementation-patternsProvides Retrieval-Augmented Generation (RAG) implementation patterns with LangChain4j for Java. Generates document ingestion pipelines, embedding stores, vector search, and semantic search capabilities
giuseppe-trisciuoglio / spring-boot-project-creatorCreates and scaffolds a new Spring Boot project (3.x or 4.x) by downloading from Spring Initializr, generating package structure (DDD or Layered architecture), configuring JPA, SpringDoc OpenAPI, and Docker Compose services (PostgreSQL, Redis, MongoDB)
giuseppe-trisciuoglio / spring-boot-security-jwtProvides JWT authentication and authorization patterns for Spring Boot 3.5.x covering token generation with JJWT, Bearer/cookie authentication, database/OAuth2 integration, and RBAC/permission-based access control using Spring Security 6.x
giuseppe-trisciuoglio / codexProvides Codex CLI delegation workflows for complex code generation and development tasks using OpenAI's GPT-5.3-codex models, including English prompt formulation, execution flags, sandbox modes, and safe result handling
giuseppe-trisciuoglio / sonarqube-mcpProvides SonarQube and SonarCloud integration patterns via the Model Context Protocol (MCP) server. Enables quality gate monitoring, issue discovery and triaging, pre-push code analysis, and rule education directly in the agent workflow
giuseppe-trisciuoglio / nextjs-performanceExpert Next.js performance optimization skill covering Core Web Vitals, image/font optimization, caching strategies, streaming, bundle optimization, and Server Components best practices
giuseppe-trisciuoglio / aws-cloudformation-bedrockProvides AWS CloudFormation patterns for Amazon Bedrock resources including agents, knowledge bases, data sources, guardrails, prompts, flows, and inference profiles
giuseppe-trisciuoglio / aws-cloudformation-cloudfrontProvides AWS CloudFormation patterns for CloudFront distributions, origins (ALB, S3, Lambda@Edge, VPC Origins), CacheBehaviors, Functions, SecurityHeaders, parameters, Outputs and cross-stack references
giuseppe-trisciuoglio / aws-cloudformation-ecsProvides AWS CloudFormation patterns for ECS clusters, task definitions, services, container definitions, auto scaling, blue/green deployments, CodeDeploy integration, ALB integration, service discovery, monitoring, logging, template structure, parameters, outputs, and cross-stack references
giuseppe-trisciuoglio / aws-cloudformation-lambdaProvides AWS CloudFormation patterns for Lambda functions, layers, API Gateway integration, event sources, cold start optimization, monitoring, logging, template validation, and deployment workflows
giuseppe-trisciuoglio / aws-cost-optimizationProvides structured AWS cost optimization guidance using five pillars (right-sizing, elasticity, pricing models, storage optimization, monitoring) and twelve actionable best practices with executable AWS CLI examples
giuseppe-trisciuoglio / aws-drawio-architecture-diagramsCreates professional AWS architecture diagrams in draw.io XML format (.drawio files) using official AWS Architecture Icons (aws4 library)
giuseppe-trisciuoglio / chunking-strategyProvides chunking strategies for RAG systems. Generates chunk size recommendations (256-1024 tokens), overlap percentages (10-20%), and semantic boundary detection methods. Validates semantic coherence and evaluates retrieval precision/recall metrics
giuseppe-trisciuoglio / prompt-engineeringProvides workflows to write, debug, and optimize prompts for LLMs, including few-shot example selection, chain-of-thought structuring, system prompt design, and template composition
giuseppe-trisciuoglio / ragImplements document chunking, embedding generation, vector storage, and retrieval pipelines for Retrieval-Augmented Generation systems
giuseppe-trisciuoglio / docs-updaterProvides automated documentation updates by analyzing git changes between the current branch and the last release tag. Performs git diff analysis to identify modifications, then updates README.md, CHANGELOG.md following Keep a Changelog standard, and discovers documentation folders for contextual up…
