1,400 skills found · Page 22 of 47
FreedomIntelligence / bio-clinical-databases-hla-typingCall HLA alleles from NGS data using OptiType, HLA-HD, or arcasHLA for immunogenomics applications
FreedomIntelligence / bio-clinical-databases-myvariant-queriesQuery myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request
FreedomIntelligence / bio-clinical-databases-pharmacogenomicsQuery PharmGKB and CPIC for drug-gene interactions, pharmacogenomic annotations, and dosing guidelines
FreedomIntelligence / bio-clinical-databases-polygenic-riskCalculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics
FreedomIntelligence / bio-clinical-databases-tumor-mutational-burdenCalculate tumor mutational burden from panel or WES data with proper normalization and clinical thresholds
FreedomIntelligence / bio-clinical-databases-variant-prioritizationFilter and prioritize variants by pathogenicity, population frequency, and clinical evidence for rare disease analysis
FreedomIntelligence / bio-codon-usageAnalyze codon usage patterns and calculate codon adaptation metrics using Biopython.
FreedomIntelligence / bio-compressed-filesRead and write compressed sequence files (gzip, bzip2, BGZF) using Biopython
FreedomIntelligence / bio-consensus-sequencesGenerate consensus FASTA sequences by applying VCF variants to a reference using bcftools consensus
FreedomIntelligence / bio-copy-number-cnv-annotationAnnotate CNVs with genes, pathways, and clinical significance
FreedomIntelligence / bio-crispr-screens-jacks-analysisJACKS (Joint Analysis of CRISPR/Cas9 Knockout Screens) for modeling sgRNA efficacy and gene essentiality
FreedomIntelligence / bio-entrez-fetchRetrieve records from NCBI databases using Biopython's Entrez module (EFetch, ESummary utilities).
FreedomIntelligence / bio-entrez-linkNavigate between NCBI databases using Biopython's Entrez module (ELink utility).
FreedomIntelligence / bio-entrez-searchSearch NCBI databases using Biopython's Entrez module (ESearch, EInfo, EGQuery utilities).
FreedomIntelligence / bio-filter-sequencesFilter and select sequences by criteria (length, ID, GC content, patterns) using Biopython
FreedomIntelligence / bio-genome-intervals-interval-arithmeticCore set operations on genomic intervals using bedtools (CLI) and pybedtools (Python).
FreedomIntelligence / bio-geo-dataQuery and access Gene Expression Omnibus datasets using Biopython's Entrez module.
FreedomIntelligence / bio-imaging-mass-cytometry-quality-metricsQuality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC
FreedomIntelligence / bio-clinical-databases-dbsnp-queriesQuery dbSNP for rsID lookups, variant annotations, and cross-references to other databases
FreedomIntelligence / bio-crispr-screens-base-editing-analysisAnalyzes base editing and prime editing outcomes including editing efficiency, bystander edits, and indel frequencies
FreedomIntelligence / bio-format-conversionConvert between sequence file formats (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO
FreedomIntelligence / bio-batch-processingProcess multiple sequence files in batch using Biopython
FreedomIntelligence / bio-fastq-qualityWork with FASTQ quality scores using Biopython
tradermonty / skill-idea-minerMine Claude Code session logs for skill idea candidates
jeremylongshore / agent-creator'Create production-grade agent .md files aligned with the current Anthropic
jeremylongshore / agent-safety-preflightGenerate a local repository risk receipt before Claude Code or other AI-agent edits. Use when the user asks to prepare a repository for agent changes, check for risky hooks or credential-writing automation, or run the /agent-preflight command.
jeremylongshore / analyzing-mempool'Monitor blockchain mempools for pending transactions, gas analysis,
jeremylongshore / analyzing-nft-rarity'Calculate NFT rarity scores and rank tokens by trait uniqueness.
jeremylongshore / aggregating-crypto-news'Aggregate cryptocurrency news from configured RSS sources including CoinDesk,
llmsresearch / paperbananaOpen source implementation and extension of Google Research’s PaperBanana for automated academic figures, diagrams, and research visuals, expanded to new domains like slide generation.
