1,400 skills found · Page 20 of 47
microsoft / azure-ai-projects-pyBuild AI applications using the Azure AI Projects Python SDK (azure-ai-projects)
microsoft / azure-ai-transcription-pyAzure AI Transcription SDK for Python. Use for real-time and batch speech-to-text transcription with timestamps and diarization. Triggers: "transcription", "speech to text", "Azure AI Transcription", "TranscriptionClient".
microsoft / azure-cosmos-db-pyBuild Azure Cosmos DB NoSQL services with Python/FastAPI following production-grade patterns
microsoft / azure-preparePrepare azd-based Azure projects for deployment: generates azure.yaml, infrastructure (Bicep/Terraform), and Dockerfiles for the Azure Developer CLI (azd) workflow. USE ONLY when the user explicitly wants to use azd as the deployment tool, or the project already has an azure.yaml file.
microsoft / podcast-generationGenerate AI-powered podcast-style audio narratives using Azure OpenAI's GPT Realtime Mini model via WebSocket
microsoft / azure-ai-language-conversations-pyImplement Conversational Language Understanding (CLU) using the azure-ai-language-conversations Python SDK
microsoft / azure-upgradeAssess and upgrade Azure workloads between plans, tiers, or SKUs, or modernize Azure SDK dependencies in source code. WHEN: upgrade Consumption to Flex Consumption, upgrade Azure Functions plan, change hosting plan, function app SKU, migrate App Service to Container Apps, modernize legacy Azure Java…
FreedomIntelligence / benchling-integrationBenchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
FreedomIntelligence / bio-alignment-msa-statisticsCalculate alignment statistics including sequence identity, conservation scores, substitution matrices, and similarity metrics
FreedomIntelligence / bio-crispr-screens-library-designCRISPR library design for genetic screens. Covers sgRNA selection, library composition, control design, and oligo ordering
FreedomIntelligence / anndataThis skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets
FreedomIntelligence / bio-admet-predictionPredicts ADMET properties using ADMETlab 3.0 API or DeepChem models. Estimates bioavailability, CYP inhibition, hERG liability, and 119 toxicity endpoints with uncertainty quantification. Filters for PAINS and other structural alerts
FreedomIntelligence / bio-alignment-ioRead, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis
FreedomIntelligence / bio-alignment-msa-parsingParse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis
FreedomIntelligence / bio-atac-seq-atac-qcQuality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity
FreedomIntelligence / bio-chipseq-motif-analysisDe novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data
FreedomIntelligence / bio-clinical-databases-somatic-signaturesExtract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes
FreedomIntelligence / bio-copy-number-cnv-visualizationVisualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or other callers
FreedomIntelligence / bio-copy-number-cnvkit-analysisDetect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling
FreedomIntelligence / bio-crispr-screens-batch-correctionBatch effect correction for CRISPR screens. Covers normalization across batches, technical replicate handling, and batch-aware analysis
FreedomIntelligence / bio-crispr-screens-crispresso-editingCRISPResso2 for analyzing CRISPR gene editing outcomes. Quantifies indels, HDR efficiency, and generates comprehensive editing reports
FreedomIntelligence / bio-crispr-screens-hit-callingStatistical methods for calling hits in CRISPR screens. Covers MAGeCK, BAGEL2, drugZ, and custom approaches for identifying essential and resistance genes
FreedomIntelligence / bio-crispr-screens-mageck-analysisMAGeCK (Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout) for pooled CRISPR screen analysis. Covers count normalization, gene ranking, and pathway analysis
FreedomIntelligence / bio-crispr-screens-screen-qcQuality control for pooled CRISPR screens. Covers library representation, read distribution, replicate correlation, and essential gene recovery
FreedomIntelligence / bio-ctdna-mutation-detectionDetects somatic mutations in circulating tumor DNA using variant callers optimized for low allele fractions with UMI-based error suppression. Reliably detects mutations at VAF above 0.5 percent using consensus-based approaches
FreedomIntelligence / bio-differential-splicingDetects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes
FreedomIntelligence / bio-epidemiological-genomics-amr-surveillanceDetect and track antimicrobial resistance genes using AMRFinderPlus and ResFinder with epidemiological context. Monitor resistance trends and identify emerging resistance patterns
FreedomIntelligence / bio-epidemiological-genomics-pathogen-typingPerform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA
FreedomIntelligence / bio-epidemiological-genomics-phylodynamicsConstruct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis. Estimate divergence times, molecular clock rates, and ancestral states
FreedomIntelligence / bio-epidemiological-genomics-transmission-inferenceInfer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data
