65 skills found · Page 2 of 3
nikolaichik / SigmoIDA Xojo/python tool for identification and annotation of transcription factor binding sites in bacterial genomes
kundajelab / Fi NeMoIdentifying transcription factor binding sites from neural network contribution scores
ashleymaeconard / TIMEORTIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
drewwiens / TensorFlow DNNs For Predicting DNA Transcription Factor BindingDeep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
microsoft / BindVAEVariational Auto Encoders for learning binding signatures of transcription factors
sperfu / ScFANPredicting transcription factor binding in single cells through deep learning
const-ae / Neural Network DNA DemoJupyter Notebook to demonstrate the use of Neural Networks for Transcription Factor Binding Site Prediction
lhy0322 / BertSNRBertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites based on DNA language model
rsa-tools / Motif DatabasesCollections of transcription factor binding motifs for the software suite Regulatory Sequence Analysis Tools (RSAT)
YuBinLab-QUST / DeepSTFDeepSTF: Predicting transcription factor binding sites by interpretable deep neural networks combining sequence and shape
zeyang-shen / MaggieBioinformatic approach to identify functional transcription factor binding motifs
ceragoguztuzun / MotifGenieMotifGenie is a Python command line tool for searching transcription factor binding motif sequences in merged ChIP-Seq binding sites. First, MotifGenie analyzes multiple ChIP-Seq samples simultaneously to identify shard binding regions for a locus of interest, then, searches the binding motif sequence of a given transcription factor in these shared binding regions.
seqcode / BichromInterpretable bimodal network for transcription factors binding site prediction
eggduzao / OlympusA unified framework for discovering, analyzing, integrating, and visualizing regulatory motifs and transcription factor binding sites across bulk, single-cell, and long-read sequencing modalities.
ArnautDaniel / Raylib Factorbindings for the raylib + raygui library in Factor
sirajulsalekin / DeepSNRBase-pair resolution detection of transcription factor binding site by deep deconvolutional network
davidenoma / MokaMOKA Snakemake pipeline for GWAS incorporating user provided multi-omics data sources such as gene expression, neural network weights, transcription factor binding, and evolutionary conservation scores.
ajank / RomulusRomulus: Robust multi-state identification of transcription factor binding sites from DNase-seq data
HAugustijn / MiniMotifDetect transcription factor binding sites in bacterial genomes
pinellolab / MotifRaptorExplore the effect of genetic variants on transcription factor binding sites
